SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7511

Length: 429 nt

UniGene Fasta

>biog3_v1.0_unigene7511
AATGTATTCAAAAGATGGATTGGGAAACGTTGGAAGGGAAGATCAAGAAATGGAATCAGGCTGTAAAGATTGCTGTCCAGGTTCTTCTTGGCAGTGAGAAGCGCCTTTGCGTTCAGATCTTTGAGCAACTAGGTTCTATTCAAGACACTTGCTTTGTTGAGACTGCAAAGGGTGCTATTATGCAGCTTCTAAATTTTGCTGAGGCGATTGCAATAAGTCGCCGGTCTCCGGAAAGGCTCTTTAGGATTCTGGACATGTATGAGAGCCTCTCGGATCTTCTTCCAGCCATTAAGTCAATTTTTTCGGACGAGTCCTGTGCCTGCATCAGAGCAGAGGCCGATGAAATTTTGACACGATTAGGAGAGGCTGCGAAGGGGACATTTGTTGAATTTGAAAATGCTATTCAGAGGGACACTTCCAAGACTCCAA

Ace file of the UniGene biog3_v1.0_unigene7511

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene138	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Exocyst complex component, putative n=1 Tax=Ricinus communis RepID=B9RAG8_RICCO	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	49%
Blast2go	protein	-	-	65%

Source	GOs	Term	Type	Identity
Blast2go	exocytosis	GO:0006887	Biological Process	65%
Blast2go	cytosol	GO:0005829	Cellular Component	65%
Blast2go	plasma membrane	GO:0005886	Cellular Component	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	Exo70 exocyst complex subunit	IPR004140	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUF7

Fln msg: Distance to subject end: 237 aas, your sequence is shorter than subject: 142 - 627

Fln protein: CIQKMDWETLEGKIKKWNQAVKIAVQVLLGSEKRLCVQIFEQLGSIQDTCFVETAKGAIMQLLNFAEAIAISRRSPERLFRILDMYESLSDLLPAIKSIFSDESCACIRAEADEILTRLGEAAKGTFVEFENAIQRDTSKTP

Protein Length: 143

Fln nts: AATGTATTCAAAAGATGGATTGGGAAACGTTGGAAGGGAAGATCAAGAAATGGAATCAGGCTGTAAAGATTGCTGTCCAGGTTCTTCTTGGCAGTGAGAAGCGCCTTTGCGTTCAGATCTTTGAGCAACTAGGTTCTATTCAAGACACTTGCTTTGTTGAGACTGCAAAGGGTGCTATTATGCAGCTTCTAAATTTTGCTGAGGCGATTGCAATAAGTCGCCGGTCTCCGGAAAGGCTCTTTAGGATTCTGGACATGTATGAGAGCCTCTCGGATCTTCTTCCAGCCATTAAGTCAATTTTTTCGGACGAGTCCTGTGCCTGCATCAGAGCAGAGGCCGATGAAATTTTGACACGATTAGGAGAGGCTGCGAAGGGGACATTTGTTGAATTTGAAAATGCTATTCAGAGGGACACTTCCAAGACTCCAA

Fln Alignment:

Contig7511___IQKMDWETLEGKIKKWNQAVKIAVQVLLGSEKRLCVQIFEQLGSIQDTCFVETAKGAIMQLLNFAEAIAISRRSPERLFRILDMYESLSDLLPAIKSIFSDESCACIRAEADEILTRLGEAAKGTFVEFENAIQRDTSKT
A9NUF7_________________VQKMEWEILDFKIKNWIRSVRIAVRILFASEKQLCNEIFAGLDHVRDSCFAEVIMRPTMKVLAFGESVTVSKKSSERLFRVLDMYETLSDLMPDIDAVYCQESCASVRTLASTIFVQLGDSALGIMVVFENAIKAENSKT

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
149	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain