SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7509

Length: 1241 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene7509

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene79	21/21

Source	Descriptions	Term	Type	Identity
AutoFact	Cell wall invertase n=2 Tax=Fragaria x ananassa RepID=Q9ZP42_FRAAN	-	-	56%
FL-Next	sp=Beta-fructofuranosidase, insoluble isoenzyme 1; Daucus carota (Carrot).	-	-	48%
Blast2go	achain crystal structure of a cell-wall invertase from arabidopsis thaliana in complex with sucrose	-	-	68%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-fructofuranosidase.	EC:3.2.1.26	-	0.0	68%

Source	KEGGs	Term	Identity
Blast2go	Galactose metabolism	00052	68%
Blast2go	Starch and sucrose metabolism	00500	68%
Blast2go	Metabolic pathways	01100	68%

Source	GOs	Term	Type	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	68%
Blast2go	beta-fructofuranosidase activity	GO:0004564	Molecular Function	68%
Blast2go	cell wall	GO:0005618	Cellular Component	68%
Blast2go	response to karrikin	GO:0080167	Biological Process	68%

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class V/Cysteine desulfurase	IPR000192	-	-
Sma3	Glycoside hydrolase, family 32	IPR001362	-	-
Sma3	Histone H4	IPR001951	-	-
Sma3	Glycosyl hydrolases family 32, N-terminal	IPR013148	-	-
Sma3	Glycosyl hydrolase family 32, C-terminal	IPR013189	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Glycoside hydrolase, family 32, active site	IPR018053	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: P26792

Fln msg: your sequence is shorter than subject: 356 - 592

Fln protein: CKHPLHSAVHIGMWECPDFYPVSLYGTHGLDTSTTGSAVKHVLKNSLDDTKVDYYTVGHYLPHLDKYVPENGSVEGPNGLRYDYGKFYASKTFFDNNKSRRILWGWINESDSVADDLNKGWASLQAIPRVVRLDPLTRRSLFQWPVPELESLRAYNVRKDHVVLERGSVMKVEGFNSGAAQVDVEVEFELGGDYETVEELEGMTATAQSLCSRGNNNTRGFGLMVLASDDLEERSAVFFKIFKGRVNGNVHRKVALCVDQSRSTLQVDVDKTSYGGFVSVKPHQRSLSLRVLVDHSIVESFAEGGRTCITSRSYPMMAVNEKAHLFVFNYNKSPLVLRRLSAWHMKTAIQLYESQ*

Protein Length: 357

Fln nts: AATGTAAACATCCGCTGCACTCTGCTGTGCATATCGGAATGTGGGAGTGCCCGGACTTCTACCCTGTGTCCCTCTATGGTACCCATGGCCTTGACACTTCAACCACGGGTTCCGCTGTGAAGCACGTTCTCAAGAACAGTTTAGACGATACCAAAGTGGACTACTATACAGTGGGCCATTACTTGCCTCATTTGGACAAGTATGTCCCCGAAAATGGATCTGTGGAGGGCCCCAATGGCCTTAGGTATGACTACGGTAAGTTTTATGCTTCAAAAACTTTTTTTGACAATAATAAGTCGCGAAGGATTTTGTGGGGTTGGATCAATGAATCCGACAGCGTGGCGGATGATCTCAACAAAGGATGGGCTTCCCTTCAGGCGATTCCTAGGGTTGTGAGGCTTGATCCTCTTACCAGGAGAAGTCTCTTTCAGTGGCCAGTGCCAGAGCTTGAATCGTTGCGCGCGTATAATGTGAGGAAAGACCACGTGGTTTTGGAAAGAGGATCGGTAATGAAGGTGGAGGGATTCAACTCAGGAGCTGCGCAGGTGGACGTGGAGGTAGAGTTTGAGTTGGGAGGCGATTACGAAACAGTGGAGGAGTTGGAGGGAATGACAGCGACAGCTCAGAGCTTGTGCAGTCGCGGGAACAACAATACGAGGGGATTTGGGTTGATGGTGTTGGCATCTGATGATCTCGAAGAGAGGAGCGCTGTGTTCTTCAAAATTTTCAAGGGCAGAGTTAACGGCAATGTGCACAGAAAGGTGGCCTTGTGCGTGGATCAGAGCAGGTCCACGCTGCAAGTGGATGTGGATAAGACGAGCTATGGAGGATTTGTGAGCGTGAAGCCCCACCAACGGTCGCTGTCGCTTAGAGTATTGGTTGATCACTCAATCGTGGAGAGTTTTGCAGAGGGAGGGAGAACATGCATTACGTCGAGGAGTTATCCGATGATGGCGGTTAATGAGAAAGCTCATCTCTTCGTGTTTAATTATAACAAATCGCCCCTCGTCCTTCGTCGACTCTCCGCCTGGCATATGAAAACCGCCATCCAGCTATACGAATCGCAGTGA___ATTATGATGCGGATGGCTGTCCATCGAGACTTGGTGTTTCCCGTTGAAATAAATCGCAGTGTAGCCTTTTGGCTTGTGATTGTGCGATCACAATTCTCTTAAATTATTGAAGTATGTTTCATTAGAATATGAAAAAAATGGTTAGTAGAGTTAGAAATATAAACGAACATT

Fln Alignment:

Contig7509___KHPLHSAVHIGMWECPDFYPVSLYGTHGLDTSTTGSAVKHVLKNSLDDTKVDYYTVGHYLPHLDKYVPENGSVEGPNGLRYDYGKFYASKTFFDNNKSRRILWGWINESDSVADDLNKGWASLQAIPRVVRLDPLTRRSLFQWPVPELESLRAYNVRKDHVV-LERGSVMKVEGFNSGAAQVDVEVEFELGGDYETVEELEGMTATAQSLCSRGNNNTRG----FGLMVLASDDLEERSAVFFKIFKGRVNGNVHRKVALCVDQSRSTLQVDVDKTSYGGFVSVK-PHQRSLSLRVLVDHSIVESFAEGGRTCITSRSYPMMAVNEKAHLFVFNYNKSPLVLRRLSAWHMKTAIQL
P26792_________________KHPIHSQANTGMWECPDFFPVSLKGLNGLDTSVTGESVKHVLKVSLDLTRYEYYTVGTYLTDKDRYIPDNTSVDGWAGLRYDYGNFYASKTFFDPSKNRRILWGWANESDSTAHDVAKGWAGIQLIPRTLWLDP-SGKQLMQWPIEELETLRGSKVKFSRKQDLSKGILVEVKGITAAQADVEVTFSFKSLAKREPFDP-KWLEYDAEKICSLKGSTVQGGVGPFGLLTLASEKLEEYTPVFFRVFKAQ---NTH-KVLMCSDATRSSLKEGLYRPSFAGFVDVDLATDKKISLRSLIDNSVVESFGAKGKTCISSRVYPTLAVYENAHLYVFNNGSETITVENLDAWSMKKPLRM

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
28	33		33	33	0.997753
29	33		66		0.997452
30		66		33	0.997452
31	66		33		0.997452
77	20			80	0.995493
78			80	20	0.995493
110		20		80	0.995493
609	14		85		0.993533
704		25	75		0.996473
706			75	25	0.996473
707			75	25	0.996473
823			85	14	0.993533
824	14	85			0.993533
884	20			80	0.995493
885		20		80	0.995493
886	20		80		0.995493
887	80			20	0.995493
1131	33		66		0.997452
1134			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain