SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7499

Length: 1370 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene7499

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3163	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	Sterol regulatory element-binding protein site 2 protease, putative n=1 Tax=Ricinus communis RepID=B9S7Z4_RICCO	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	80%
Blast2go	sterol regulatory element-binding protein site 2	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	response to high light intensity	GO:0009644	Biological Process	85%
Blast2go	response to hydrogen peroxide	GO:0042542	Biological Process	85%
Blast2go	proteolysis	GO:0006508	Biological Process	85%
Blast2go	response to heat	GO:0009408	Biological Process	85%
Blast2go	metalloendopeptidase activity	GO:0004222	Molecular Function	85%
Blast2go	RNA binding	GO:0003723	Molecular Function	85%
Blast2go	chloroplast	GO:0009507	Cellular Component	85%
Blast2go	membrane	GO:0016020	Cellular Component	85%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: D7T3P7

Fln msg: Distance to subject end: 134 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 276 - 456

Fln protein: KRRRDWKKAEDEFKALDLNKLKSCFGYDTFFAVDVRRFGDGGIFIGNLRRPIAEVIPELEKKIKNAVGREVVLWFMEEQMDDIKKQVCMVQPKSEIDFQFESTKLSTPWGYITATLLGVTTLGTIALTSGFFVKPDATFDDYISDVLPLFGGFVTILGVSEIATRWTAGRYGVKLSPSFLVPSNWTGCLGVVNNYESILPNKKALFDIPAARTTSAYVTSSLLAITGFLLDGSFNGGDNALYVRPQFFYNNPLFSFIQYVIGPYADELGNVLPQAV

Protein Length: 277

Fln nts: CGGGAGAACAATCGAATTTCCCTTCAGAAATCGAAATTTTCTTTAAACTTCGCAATGCATCGCACGCTCGGACCTCAGAGTTTAGAAGAATGGCAGCAGCTTTGCTATCTGTCTCTTCCTTAAACACGCCATTATCTGCAAGCTTGCATAACAGTGTAAGACCCACTTCGACCAGATTCAAATTCTCATATAAAAATTACATTCAGCTCAGAAGTACATTGTGGAGGAATGTGAGTTTTGTTGTTAAATCCAGTGAAGATGAATTCCATGGTTCAACACCAACAAGTGTCAAGGAGAAAAATGGCGATGAAGAAAAACAGAGATCGAGGAAGTAGGCAAGGAGGAGAAGGGTACACAGCAAGAAACCGATTGGAAAGTTGATGAAGATTTCCAAAAGTTCATGGGGAATCCTTCCATTGAAGCAGCAGTCAAGCTGGAGAAGCAGAGAGCTGAAAGGAGGCTTAAAGAATTGGATAAGGAAGCTGGTGGTGGAAATATATTCCAAAACTTCTTTGCGGGTTTGCTTAAGAATTCGCTGGTAAAAGAGAAGGAGAGATTGGAAAAAAGCAGAAGACGAGTTTAAGGCACTGGATCTTAATAAATTAAAGAGTTGTTTTGGTTATGACACCTTTTTTGCTGTGGATGTTCGTCGCTTTGGAGATGGTGGCATTTTTATTGGAAACCTTCGAAGACCTATAGCAGAAGTCATACCTGAATTAGAAAAGAAAATCAAGAATGCTGTAGGTCGAGAAGTTGTTCTTTGGTTCATGGAAGAACAAATGGACGACATAAAAAAGCAGGTTTGCATGGTGCAACCTAAATCAGAAATAGATTTCCAATTTGAGTCCACCAAACTCAGTACTCCTTGGGGCTACATAACTGCCACACTTCTTGGTGTTACGACTCTCGGGACAATTGCACTTACAAGTGGATTCTTTGTAAAGCCAGATGCTACATTTGATGATTACATCAGTGATGTTTTGCCCCTATTTGGTGGTTTTGTCACTATTCTAGGAGTTTCTGAGATTGCAACACGCTGGACAGCAGGCCGCTATGGAGTTAAGCTGAGCCCATCATTTTTAGTTCCTTCCAACTGGACAGGTTGTCTAGGAGTTGTTAACAATTACGAGTCTATTTTACCAAACAAAAAGGCACTTTTCGATATTCCAGCAGCTAGGACAACCAGTGCCTATGTCACTTCATCCCTTCTGGCTATAACAGGATTTTTGCTTGATGGCAGTTTTAATGGAGGTGACAATGCCCTGTATGTAAGACCGCAGTTTTTCTACAACAATCCTCTCTTTTCATTCATTCAATATGTCATTGGACCATATGCTGATGAGCTTGGAAATGTTCTTCCTCAAGCAGTA

Fln Alignment:

Contig7499___AEDEFKALDLNKLKSCFGYDTFFAVDVRRFGDGGIFIGNLRRPIAEVIPELEKKIKNAVGREVVLWFMEEQMDDIKKQVCMVQPKSEIDFQFESTKLSTPWGYXXXXXXXXXXXXXXXXXSGFFVKPDATFDDYISDVLPLFGGFVTILGVSEIATRWTAGRYGVKLSPSFLVPSNWTGCLGVVNNYESILPNKKALFDIPAARTTSAYVTSSLLAITGFLLDGSFNGGDNALYVRPQFFYNNPLFSFIQYVIGPYADELGNVLPQAV
D7T3P7_________________AEEAFKALDLNKLKNCFGFDTFYATDVRRFGDGGIFIGNLRRPIEEVIPKLEKKLSEAAGREVVLWFMEEKANDITKQVCMVQPKAEMDLQFESTKLSTPWGYISSIVLCVATFGTIALMSGFFLKPNATFDDYLADVVPLFSGFVTILGVSEIATRVTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARTASAYITSLVLAVAAFIADGSFNGGDNALYIRPQFFYNNPLLSFIQFVIGPYTDDLGNVLPYAV

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
205	66		33		0.997452
207		66	33		0.997452
566	83			16	0.994512
567	83		16		0.994512
576		16	83		0.994512
578		83		16	0.994512
579			83	16	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain