SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7497

Length: 1674 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene7497 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14782	71/72

Source	Descriptions	Term	Type	Identity
AutoFact	pyruvate dehydrogenase E1 beta subunit isoform 2 [Zea mays] gb\|AAC72193.1\| pyruvate dehydrogenase E1 beta subunit isoform 2 [Zea mays]	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	pyruvate dehydrogenase e1 component subunit beta	-	-	90%

Source	InterPros	Term	Type	Identity
Sma3	Transketolase, C-terminal	IPR005476	-	-
Sma3	Transketolase-like, C-terminal	IPR015941	-	-
Sma3	Transketolase-like, pyrimidine-binding domain	IPR005475	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPU2

Fln msg:

Fln protein: MWGALRQKSGMTTLFSSLRHGQVLERLVPMASTPLRNLSTAAKEISVRDALNSAIDEEMSADPKVFLMGEEVGEYQGAYKISKGLLQKFGPDRVLDTPITEAGFTGIAVGAAYYGLRPIVEFMTFNFAMQAIDQIINSAAKTYYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASCPGLKVLTPYSAEDSRGLMKAAIRDPDPVVFLENELLYGESFPVSAECLDPSFCLPIGKAKIEREGKDVTITAFSKMVGYALQAAQELEKEGISAEVINLRSIRPLDRATINASVRKTSRLVTVEEGFPQHGIGAEICASVVEESFEYLDAPVERITGADVPMPYAANLERLAVPQVEDIIRASKRACYRAVPMSAVA*

Protein Length: 380

Fln nts: GACCCAATACCCACAGGCCCCCACGGGTTTACTTACGAAATCATCAGTTATTATTAGGCAGACTCAAGTTATTGGGCAGACTCAAGGGTTTGGTGAAAACGTGAAGGTTAGCTATACGCAGACGCAGACAGACAGAGGAAGAAGAACAGAGCCTAGGGTTTGGTGGGAGTAACCAACAAGGTTGTGGTTGGTGAGGAAGACGACTCTTTGTCTGACCCGACTTCCTTTTTCTGTGAGTTCTGTGGTTCCTGCGTCGGACGCAAATCGGCCATTGACAGTGTTATTCAATCTTCTCAGTTAAACTCTAAGAAGAGAAG_-_ATGTGGGGTGCTTTGCGGCAAAAATCTGGCATGACAACTCTTTTTTCTTCATTGAGACATGGTCAAGTTTTGGAGAGGTTGGTGCCTATGGCATCCACACCCTTAAGAAATTTATCTACTGCTGCTAAAGAGATATCTGTGAGGGATGCTCTTAACTCAGCTATTGATGAAGAAATGTCTGCAGATCCAAAAGTCTTTTTAATGGGAGAGGAGGTTGGTGAATACCAAGGAGCATATAAGATATCAAAAGGCCTTTTGCAGAAGTTTGGACCTGACAGGGTTCTAGACACCCCAATCACTGAGGCGGGTTTTACTGGAATTGCTGTGGGCGCAGCATACTATGGGCTACGACCAATTGTGGAGTTCATGACCTTTAATTTTGCCATGCAGGCTATTGATCAAATAATAAATTCTGCAGCCAAGACATATTATATGTCTGCAGGTCAAATTTCTGTTCCCATTGTTTTTAGAGGACCAAATGGAGCTGCTGCTGGTGTTGGTGCTCAGCACTCACAGTGTTATGCTGCATGGTATGCTTCTTGTCCAGGGCTGAAAGTTTTGACCCCCTATTCAGCAGAAGATTCTCGTGGATTGATGAAAGCTGCCATCCGTGATCCAGATCCTGTCGTTTTTCTTGAAAATGAATTGCTGTACGGGGAGTCTTTTCCAGTCTCAGCAGAGTGTCTTGATCCTAGCTTCTGTCTCCCCATTGGGAAGGCAAAGATTGAACGAGAAGGAAAAGATGTAACGATCACTGCCTTTTCTAAAATGGTTGGCTATGCATTACAGGCTGCACAGGAGCTTGAAAAGGAAGGGATCAGTGCTGAGGTAATAAATCTTCGTTCGATTCGACCATTGGACAGAGCTACAATTAATGCATCCGTTAGGAAGACAAGTCGACTTGTGACAGTGGAAGAAGGCTTTCCACAACATGGAATTGGTGCAGAGATCTGCGCTTCTGTGGTTGAGGAAAGTTTTGAATATTTGGATGCTCCTGTGGAAAGAATCACCGGTGCAGATGTTCCTATGCCATATGCTGCAAATTTGGAGCGCTTAGCTGTTCCACAGGTCGAAGATATCATCCGTGCCTCAAAAAGAGCTTGTTATAGAGCAGTTCCAATGAGTGCAGTCGCGTAG___TGTAAATGTTGATTTCTTTGATCATCGTCATGCAAGTTTGTATACTGTGAACAAAGTCTCTATATATGGAAATCTGCCTAAGGCACATGGCAAGCTCATTTTTAACTTTTGTTTATGTTAAGATTGTTGGCACTGTCTATTTTAGTGCCCGCGAAGGTCACATGGAGAGAGGGCTTGTTTTTTCTGGAGTTGGAAAAAAGTATGTTCATTCTACAACATT

Fln Alignment:

Contig7497___MWGALRQKSGMTTLFSSLRHGQVLERLVPMASTPLRNLSTAAKEISVRDALNSAIDEEMSADPKVFLMGEEVGEYQGAYKISKGLLQKFGPDRVLDTPITEAGFTGIAVGAAYYGLRPIVEFMTFNFAMQAIDQIINSAAKTYYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASCPGLKVLTPYSAEDSRGLMKAAIRDPDPVVFLENELLYGESFPVSAECLDPSFCLPIGKAKIEREGKDVTITAFSKMVGYALQAAQELEKEGISAEVINLRSIRPLDRATINASVRKTSRLVTVEEGFPQHGIGAEICASVVEESFEYLDAPVERITGADVPMPYAANLERLAVPQVEDIIRASKRACYRAVPMSAVA
B8LPU2_________________MWGALRQKSGLTTLVSSLKHGQVLERFAPMASTPLRQLSTAAKEMTVRDALNSAIDEEMSADPKVFLMGEEVGEYQGAYKISKGLLQKFGPDRVLDTPITEAGFTGIGVGAAFYGLRPIVEFMTFNFAMQAIDQIINSAAKTYYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYGSCPGLKVLTPYSAEDSRGLMKAAIRDPDPVIFLENELLYGESFPVSAECLDPSFCLPIGKAKIEREGKDVTITAFSKMVGYALQAAQELEKEGISAEVINLRSIRPLDRATINASVRKTSRLVTVEEGFPQHGIGAEICTSVVEESFEYLDAPVERITGADIPMPYAANLERLAVPQVEDIIRASKRACYRAVPMSAVA

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
1123	12			87	0.992554
1126	87		12		0.992554
1149	12			87	0.992554
1151	12	87			0.992554
1324	20			80	0.995493
1325		20		80	0.995493
1326	20		80		0.995493
1328		80		20	0.995493
1335		25	75		0.996473
1400		75		25	0.996473
1403	25			75	0.996473
1406	66			33	0.997452
1604	20	80			0.995493
1607	80			20	0.995493
1641	25			75	0.996473
1643	25		75		0.996473
1645	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain