SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7488

Length: 898 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene7488

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23522	1/19
SustainPine v2.0	sp_v2.0_unigene27028	18/19

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome c oxidase subunit Vb n=1 Tax=Oryza sativa Japonica Group RepID=P92683_ORYSJ	-	-	1.0e-29	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	cytochrome c oxidase polypeptide vb	-	-	0.0	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cytochrome c oxidase, subunit Vb	IPR002124	-	0.0	-
Sma3	Gonadotropin, beta subunit, conserved site	IPR018245	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
47			25	75	0.996473
274	75			25	0.996473
275		75	25		0.996473
364			80	20	0.995493
367			80	20	0.995493
431			20	80	0.995493
433	20	80			0.995493
435	80		20		0.995493
436	20			80	0.995493
438			20	80	0.995493
440	16		83		0.994512
442		83		16	0.994512
443	83			16	0.994512
444	83			16	0.994512
446		83	16		0.994512
447			83	16	0.994512
448	83			16	0.994512
449	83			16	0.994512
452		16	83		0.994512
544	11		88		0.923564
546		88	11		0.923564
547	88			11	0.923564
554	11	88			0.923564
632	88			11	0.923564
670	88	11			0.923564
699	12	87			0.992554
700		12		87	0.992554
702			87	12	0.992554
728	25			75	0.996473
730	50			50	1.0
731		25		75	0.996473
732	25			75	0.996473
757	25	75			0.996473
760			75	25	0.996473
761			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain