SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7472

Length: 1810 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene7472 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7817	66/67

Source	Descriptions	Term	Type	Identity
AutoFact	Type 1 1-hydroxy-2-methyl-2-(E)-butenyl-4-phosphate reductase n=3 Tax=Pinaceae RepID=A9P331_PINTA	-	-	92%
FL-Next	tr=Putative 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase type 1; Pinus densiflora (Japanese red pine).	-	-	97%
Blast2go	1-hydroxy-2-methyl-2- -butenyl 4-diphosphate reductase	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	4-hydroxy-3-methylbut-2-enyl diphosphate reductase.	EC:1.17.1.2	-	0.0	88%

Source	KEGGs	Term	Identity
Blast2go	Terpenoid backbone biosynthesis	00900	88%
Blast2go	Biosynthesis of terpenoids and steroids	01062	88%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	88%
Blast2go	Biosynthesis of plant hormones	01070	88%
Blast2go	Metabolic pathways	01100	88%
Blast2go	Biosynthesis of secondary metabolites	01110	88%

Source	GOs	Term	Type	Identity
Blast2go	terpenoid biosynthetic process	GO:0016114	Biological Process	88%
Blast2go	isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	GO:0019288	Biological Process	88%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	88%
Blast2go	4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	GO:0051745	Molecular Function	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	LytB protein	IPR003451	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B9U4U9

Fln msg:

Fln protein: MPSSLSFAAVCRPEAVGPRTLSNGRGSSIIADSSAILSIRLTRARQPDVCRNLKLRRTQVRSDAAPSAVDSHTGEFDTKAFRRTLTRKESYNRKGFGHKEETLEAMDKEYTSDIIKTLKENNNEYTWGNVTVKLAESFGFCWGVERAVQIAYEARKQFPDQKLWITNEIIHNPTVNQRLKEMQIEDIPVMEEGKKFDVVNNDDVVILPAFGAALSEMQILDEKGVKIVDTTCPWVSKVWNTVEKHKKESFTSVIHGKKGHEETVATSSFAGKYIIVKDIKEATYVCDYILAGKLDGSSSTKEEFLKKFEKAISRGFDPDCDLVKVGIANQTTMLKGETEEIGKLLEKTMMQKYGVEFINEHFMSFNTICDATQERQDAMYNLVKEKLDLILVVGGWNSSNTSHLQEIAEQNGTPTYWIDSEKRIGPGNRIAYKLSHGELVVKENWLPTGPLKIGITSGASTPDKILEDTLKVVFKMKDEEALQTV*

Protein Length: 487

Fln nts: AATGTCTCAATACAATTGAGTTCTGTATTTGGTTCCCAGTCTGTTTCTGTCCGTTTAAGGTTTTTACGAAGTAAACATCAATAGTTGGGTTTGTTGTAGTCTCACTGTGGCG_-_ATGCCTTCGAGCCTCAGCTTTGCAGCAGTTTGCAGACCTGAAGCTGTAGGACCAAGAACTTTAAGCAATGGACGTGGGAGTTCGATTATTGCGGATTCATCAGCCATTTTGAGTATAAGATTGACTCGTGCAAGGCAACCAGATGTCTGCAGAAACTTGAAGCTAAGGAGGACACAAGTTAGAAGTGATGCTGCTCCTAGCGCTGTAGATTCACACACAGGGGAATTTGATACGAAAGCTTTCAGGAGGACTTTGACTAGAAAAGAAAGTTATAACAGAAAGGGATTTGGTCACAAGGAAGAAACGCTTGAAGCAATGGACAAAGAGTATACTAGTGATATCATTAAAACATTGAAAGAAAACAACAACGAATACACTTGGGGTAATGTAACTGTTAAGCTTGCTGAATCATTTGGATTCTGTTGGGGTGTGGAACGAGCTGTTCAAATTGCATATGAAGCAAGAAAGCAATTTCCAGATCAGAAGCTGTGGATTACCAATGAAATAATACACAATCCAACTGTGAATCAGAGACTGAAGGAGATGCAGATTGAAGACATTCCTGTAATGGAAGAAGGGAAAAAATTTGATGTTGTAAACAATGATGATGTGGTTATTCTTCCAGCTTTTGGAGCAGCACTAAGTGAAATGCAGATTCTCGATGAAAAAGGTGTGAAGATTGTGGATACTACATGTCCATGGGTTTCAAAGGTTTGGAACACTGTGGAGAAGCATAAAAAGGAAAGCTTTACTTCTGTAATCCATGGAAAGAAAGGGCATGAGGAAACAGTTGCCACTTCATCATTTGCAGGGAAATATATAATTGTAAAGGACATCAAGGAGGCAACATATGTGTGTGACTACATTCTGGCTGGCAAGCTTGATGGTTCTAGTAGTACTAAAGAAGAATTTCTTAAAAAATTTGAAAAAGCTATTTCAAGGGGATTTGATCCTGATTGTGACTTGGTTAAAGTTGGAATTGCCAACCAGACAACAATGTTGAAAGGAGAAACTGAAGAGATAGGAAAACTTCTTGAGAAAACGATGATGCAAAAATATGGAGTGGAATTTATCAATGAGCATTTTATGAGCTTCAACACTATATGCGATGCAACACAGGAAAGGCAAGATGCCATGTATAACTTGGTGAAGGAGAAGCTTGATCTTATTCTTGTTGTAGGAGGATGGAATTCTAGTAATACATCCCATTTACAAGAAATCGCAGAGCAGAATGGAACTCCAACTTATTGGATTGATTCCGAGAAGCGCATAGGACCTGGTAACCGCATTGCATACAAACTTAGTCACGGTGAGCTGGTGGTGAAGGAAAATTGGCTTCCAACGGGTCCACTCAAAATTGGAATCACTTCAGGTGCATCAACTCCTGATAAGATACTGGAGGATACGTTGAAAGTCGTGTTCAAGATGAAGGATGAGGAGGCCTTGCAGACGGTATAA___TACGAAGGGATGCCAATTTCCTTAACAAATTGTGGCATATAAGCCCAAATGGTACCAAAGTTGTCTATTATGCTATGTGAAAACTTCCACGTTGTACACAAAATGGCCACATGCCATCCTGTTTTTGAGCCACTAGACTATGAGTAGACAAATTATGGTCAAAGGTGTGTAGAGTAGGAAAACCTTTTGATATGCCTTGGTCCCAAACCTACTTTAATAACAGACCGAATTTAATATGTT

Fln Alignment:

Contig7472___MPSSLSFAAVCRPEAVGPRTLSNXXXXXXXXXXXXXXXXXLTRARQPDVCRNLKLRRTQVRSDAAPSAVDSHTGEFDTKAFRRTLTRKESYNRKGFGHKEETLEAMDKEYTSDIIKTLKENNNEYTWGNVTVKLAESFGFCWGVERAVQIAYEARKQFPDQKLWITNEIIHNPTVNQRLKEMQIEDIPVMEEGKKFXXXXXXXXVILPAFGAALSEMQILDEKGVKIVDTTCPWVSKVWNTVEKHKKESFTSVIHGKKGHEETVATSSFAGKYIIVKDIKEATYVCDYILAGKLDGSSSTKEEFLKKFEKAISRGFDPDCDLVKVGIANQTTMLKGETEEIGKLLEKTMMQKYGVEFINEHFMSFNTICDATQERQDAMYNLVKEKLDLILVVGGWNSSNTSHLQEIAEQNGTPTYWIDSEKRIGPGNRIAYKLSHGELVVKENWLPTGPLKIGITSGASTPDKILEDTLKVVFKMKDEEALQTV
B9U4U9_________________MHSSLSFAAVCRPEAVGPRTLSNGRGSSVIADSSAILSIRLTRAMQPDVCRNLKLRRTQVRSDAAPSAVGSHTGEFDTKAFRRTLTRKENYNRKGFGHKEETLEAMDKEYTSDIIKTLKENNNEYTWGNVTVKLAESFGFCWGVERAVQIAYEARKQFPDQKLWITNEIMHNPTVNQRLKEMQIEDIPVMEEGKKFDVVNNDDVVILPAFGAALSEMQILDEKGVKIADTTCPWVSKVWNTVEKHKKESFTSVIHGKKGHEETVATSSFAGKYIIVKDIKEATYVCDYILAGKLDGSSSTKEEFLKKFEKAISRGFDPDCDLVKVGIANQTTMLKGETEEIGKLLEKTMMQKYGVEFINEHFMCFNTICDATQERQDAMYNLVKEKLDLILVVGGWNSSNTSHLQEIAEQNGTPTYWIDSEKRIGPGNRIAYKLSHGELVGKENWLPTGPLKIGITSGASTPDKILEDTLKVVFKMKDEEALQMV

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
179	25		75		0.996473
181		75		25	0.996473
182	75		25		0.996473
183	75			25	0.996473
489	16	83			0.999991
490	18			81	0.999994
536	90			10	0.90298
546		11	88		0.923564
547	11	88			0.923564
593	11		88		0.923564
597		88		11	0.923564
607	16		83		0.994512
626	11	88			0.923564
628		88	11		0.923564
629	88			11	0.923564
654	11			88	0.923564
655	11		88		0.923564
656		88		11	0.923564
657	88		11		0.923564
680	12			87	0.992554
682	12	87			0.992554
762		83		16	0.994512
785	33			66	0.997452
786		33		66	0.997452
787	33			66	0.997452
939	16	83			0.994512
943			83	16	0.994512
959	20		80		0.995493
961	20			80	0.995493
999	25			75	0.996473
1035	25	75			0.996473
1037		75		25	0.996473
1038	75		25		0.996473
1039		75		25	0.996473
1045	25			75	0.996473
1049		75		25	0.996473
1173	10	90			0.90298
1335	16		83		0.999991
1336		16		83	0.999991
1347	14		85		0.993533
1348		20		80	0.995493
1349	20			80	0.995493
1379		25		75	0.996473
1382	75			25	0.996473
1384	25			75	0.996473
1385	25	75			0.996473
1387			20	80	0.995493
1436	25			75	0.996473
1439	75		25		0.996473
1440	75			25	0.996473
1486			20	80	0.995493
1487		80		20	0.995493
1721		12	87		0.992554
1723		87		12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain