SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7462

Length: 513 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene7462
AGCTATAGTCATGCTTTCACAGGCTTCTCTGCAGTTATGTCCAAGGACCAAGCAACTGCTATTTCTGGAAAAGCTGGGGTCGTATCAGTTTTCCCTGATCCATTGCTCCAGCTGCACACCACGCGTTCCTGGGACTTCCTGCAAACTGAATCTGGCTTGGCGACACCTTCTTATACTGCTTACTGGGGACTCCATAATTGGCATGATTGATACAGGCGTTTGGCCTGACTCGCCAAGTTTCAACGATGCCGGGATTGGTCCAGTTCCTTCTCGGTGGAAAGGAGTATGCACTGCAGGACAGGATTTCAAGTGCAATAGAAAAATAATCGGCGCACGCTATTACAAAGGAAATGGCGGTTCAGGAACAGGGACGGATAAGGCACGGAGGGAGCAGCCATTGTCAGCGAGAGACAGCCAGGGGCATGGAACACACACAGCCTCAACACAGCAGGCAGTGTCGTCCCGGATGCCGATTATTACGGGCTTGCCAAAGGATCTGCAAGAGGAGGATTT

Ace file of the UniGene biog3_v1.0_unigene7462 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4109	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	subtilisin-like protein [Picea abies]	-	-	52%
FL-Next	tr=Subtilisin-like protein; Picea abies (Norway spruce) (Picea excelsa).	-	-	33%
Blast2go	subtilisin-like protease-like	-	-	67%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine endopeptidases.	EC:3.4.21.-	-	0.0	67%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	67%
Blast2go	serine-type endopeptidase activity	GO:0004252	Molecular Function	67%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	67%
Blast2go	apoplast	GO:0048046	Cellular Component	67%

Source	InterPros	Term	Type	Identity
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3		IPR000991	-	-
Sma3	Zinc finger, DHHC-type, palmitoyltransferase	IPR001594	-	-
Sma3	GMP synthase, C-terminal	IPR001674	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	GMP synthase, N-terminal	IPR004739	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3		IPR011702	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Glutamine amidotransferase type 1	IPR017926	-	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	-
Sma3		IPR018318	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q40764

Fln msg: warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 530 aas, your sequence is shorter than subject: 171 - 779

Fln protein: SYSHAFTGFSAVMSKDQATAISGKAGVVSVFPDPLLQLHTTRSWDFLQTESGLATPSYTAYWGLHNWHD*YRRLA*LAKFQRCRDWSSSFSVERSMHCRTGFQVQ*KNNRRTLLQRKWRFRNRDG*GTEGAAIVSERQPGAWNTHSLNTAGSVVPDADYYGLAKGSARGGF

Protein Length: 172

Fln nts: AGCTATAGTCATGCTTTCACAGGCTTCTCTGCAGTTATGTCCAAGGACCAAGCAACTGCTATTTCTGGAAAAGCTGGGGTCGTATCAGTTTTCCCTGATCCATTGCTCCAGCTGCACACCACGCGTTCCTGGGACTTCCTGCAAACTGAATCTGGCTTGGCGACACCTTCTTATACTGCTTACTGGGGACTCCATAATTGGCATGATTGATACAGGCGTTTGGCCTGACTCGCCAAGTTTCAACGATGCCGGGATTGGTCCAGTTCCTTCTCGGTGGAAAGGAGTATGCACTGCAGGACAGGATTTCAAGTGCAATAGAAAAATAATCGGCGCACGCTATTACAAAGGAAATGGCGGTTCAGGAACAGGGACGGATAAGGCACGGAGGGAGCAGCCATTGTCAGCGAGAGACAGCCAGGGGCATGGAACACACACAGCCTCAACACAGCAGGCAGTGTCGTCCCGGATGCCGATTATTACGGGCTTGCCAAAGGATCTGCAAGAGGAGGATTT

Fln Alignment:

Contig7462___SYSHAFTGFSAVMSKDQATAISGKAGVVSVFPDPLLQLHTTRSWDFLQTESGLATPSYTAYWGLHNWHD*YRRLA*LAKFQRCRDW--SSSFSVERSM---------HCRTGFQVQ*KNNRRTLLQRKWRFRNRDG*GTEGAAIVS----ERQPGAWNTHSLNT----AGSVVPDADYYGLAKGSARGG
Q40764_________________SYTYAFNGFAAVLSKEQATTLVGKPGVLSVFPDTVLNLHTTHSWDYL--EKDLSMPGFSYRKPKSSGTD------IILGFLDTGIWPEAASFS-DKGMGPVPSRWKGACVKGENFNVSNCNRKIIGARYYSGGEDDDLKKNSKPKSIWPESRTARDYQGHGTYTAATAAGSFVDNANYNGLANGTARGG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain