SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7446

Length: 824 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene7446

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15442	8/21
SustainPine v2.0	sp_v2.0_unigene16792	2/21
SustainPine v2.0	sp_v2.0_unigene60314	10/21
SustainPine v2.0	sp_v2.0_unigene78543	1/21

Source	Descriptions	Term	Type	Identity
AutoFact	Cysteine proteinase C1A n=1 Tax=Dactylis glomerata RepID=D0VEB8_DACGL	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	cysteine proteinase	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	0.0	75%
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase C1A, papain	IPR013128	-	-
Sma3	Peptidase C1A, papain C-terminal	IPR000668	-	-
Sma3	Proteinase inhibitor I29, cathepsin propeptide	IPR013201	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMA7

Fln msg: Distance to subject end: 92 aas, atg_distance in limit (1-15): atg_distance = 8, W2: There is no M at the beginning, your sequence is shorter than subject: 274 - 372

Fln protein: CLLVFLATTLWTLSANASDSSPGFTDEDLKSEESLRLLYDKWALRHRTTRSLDSDEHAKRFEIFKDNVKYIDSVNQKDGPYKLGLNKFADLSNEEFKAMHMTTRMEKHKSLRRDRGTQSGSFMYQNSKHLPVSIDWRKKGAVNPVKNQGQCGSCWAFSTIASVEGINYLKTGKLVSLSEQQLVDCSKENAGCNGGLMDNAFQYIIDNGGIVSEEEYPYTAEASECSTSKIESTKTTTVIDGFEDVPANNEAALKKAVAHQPVSVAIEASGQDYI

Protein Length: 275

Fln nts: A_-_ATGTCTGTTAGTCTTCCTTGCGACCACCTTGTGGACTTTATCAGCCAACGCTTCGGATTCTTCCCCTGGATTTACAGATGAAGACCTCAAGTCTGAGGAAAGTCTGCGACTCCTTTATGATAAATGGGCACTTCGGCATCGCACCACCAGAAGTTTGGATTCGGATGAGCATGCCAAACGATTCGAGATATTCAAAGATAATGTGAAATACATCGACTCCGTGAATCAGAAGGATGGTCCATACAAGCTTGGATTGAATAAGTTTGCAGATCTGAGTAACGAAGAATTCAAGGCCATGCACATGACAACTAGAATGGAGAAGCACAAGAGTCTGCGTCGAGACAGAGGAACACAGAGTGGATCATTCATGTACCAAAACTCCAAGCACCTGCCAGTGTCTATTGATTGGAGGAAGAAAGGAGCAGTTAATCCTGTGAAGAACCAAGGCCAATGTGGAAGTTGTTGGGCATTTTCAACTATAGCTTCTGTAGAGGGCATTAACTATCTCAAAACAGGGAAGCTGGTTTCTTTATCAGAGCAACAGTTGGTAGATTGCAGTAAAGAGAACGCAGGATGCAACGGAGGGCTTATGGACAACGCCTTCCAATATATCATAGATAATGGCGGGATCGTTAGTGAAGAAGAGTATCCTTACACTGCCGAAGCGAGCGAGTGCAGTACCTCCAAGATTGAATCAACAAAAACAACAACAGTTATTGATGGCTTTGAGGATGTCCCTGCTAACAATGAAGCCGCACTCAAGAAAGCTGTGGCTCATCAACCTGTGTCTGTAGCCATCGAAGCAAGTGGTCAAGATTACATT

Fln Alignment:

Contig7446___LLVFLATTLWTLSANASDSSPGFTDEDLKSEESLRLLYDKWALRHRTTRSLDSDEHAKRFEIFKDNVKYIDSVNQKDGPYKLGLNKFADLSNEEFKAMHMTTRMEKHKSLRRDRGTQSGSFMYQNSKHLPVSIDWRKKGAVNPVKNQGQCGSCWAFSTIASVEGINYLKTGKLVSLSEQQLVDCSKENAGCNGGLMDNAFQYIIDNGGIVSEEEYPYTAEAXXXXXXXXXXXXXXXVIDGFEDVPANNEAALKKAVAHQPVSVAIEASGQDY
B8LMA7_________________LLLFLAA-LWTLSANALDSSPGFTDEELESDESLRGLYDKWALQHRSTRSLDSDEHARRFEIFKENVKHIDSVNKKDGPYKLGLNKFADLSNEEFKAMHMTTKMEKHKSLRGDRGVESGSFMYQNSKRLPASIDWRKKGAVTPVKNQGQCGSCWAFSTIASVEGINYIKTGKLVSLSEQQLVDCSKENAGCNGGLMDNAFQYIIDNGGIVTEDEYPYTAEAGECSTTKIESKSIATIIDGFEDVPANNEGALKKAVAHQPVSIAIEASGHDF

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
682	12		87		0.992554
684	87			12	0.992554
690	50	50			1.0
753	16		83		0.994512
754	83	16			0.994512
756			83	16	0.994512
757		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain