SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7423

Length: 1600 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene7423

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22345	30/31

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AT hook motif DNA-binding family protein [Arabidopsis thaliana] ref\|NP_850215.1\| AT hook motif DNA-binding family protein [Arabidopsis thaliana] ref\|NP_973590.1\| AT hook motif DNA-binding family protein [Arabidopsis thaliana] ref\|NP_001118437.1\| AT hook m	-	-	8.40779e-45	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	at hook motif dna-binding family protein	-	-	0.0	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytosol	GO:0005829	Cellular Component	0.0	68%

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor TFIIB	IPR000812	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Domain of unknown function DUF296	IPR005175	-	-
Sma3	Microtubule-associated protein, MAP65/ASE1-type	IPR007145	-	-
Sma3	Predicted AT-hook DNA-binding	IPR014476	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9Z4

Fln msg: your sequence is shorter than subject: 377 - 395

Fln protein: NVMVQRRVRGHPIQILPPMLSLQPPQRPMVSPEQSLPMVNNNNTSNASASSPLYSEGPTAIFNHPGSGRASLAGSETLKRKRGRPRKYGTDVDGFGNVGLGLSSPSSPFSDKKARGSGKKAQMVALGCAGHGFIPHVITIAAGEDVCKKIMAFMQHGPWAVCVLSANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSFLLNDAGGTPTRTGGLSVSLAGSDGRVIGGGVGGLLMAASPVQVVVGTFLVDNKKDLGRVGNGEPSIGTLSGSVSGGSPSPSVAAQSRAEASAATNLRKGAEGEQNTGGSSYNMQPQGLRMMSLQDWAGTHFGTETKSDTETALTGRAKPRDRDDGSRFNKVDQEGERRGQHITFEN*

Protein Length: 378

Fln nts: AATGTCATGGTTCAACGCAGAGTACGCGGGCACCCAATTCAAATCCTGCCACCAATGCTGTCTTTGCAGCCCCCTCAGAGACCCATGGTGAGCCCTGAACAGTCCCTCCCTATGGTTAATAACAATAATACATCCAATGCCTCCGCTTCCTCCCCTCTGTATTCCGAGGGCCCAACTGCAATTTTTAATCATCCAGGGAGTGGAAGAGCGAGTCTGGCGGGTTCAGAGACCTTAAAGAGGAAGAGGGGAAGGCCTAGAAAGTATGGCACAGATGTTGATGGATTTGGTAATGTGGGTTTGGGCTTATCATCCCCATCATCACCATTTTCAGATAAAAAAGCGCGTGGGTCTGGCAAAAAAGCTCAGATGGTTGCACTTGGGTGTGCAGGGCATGGATTCATTCCACATGTCATTACAATTGCAGCAGGGGAAGATGTCTGTAAGAAAATAATGGCTTTTATGCAACATGGGCCATGGGCAGTTTGTGTACTTTCTGCTAATGGAGCTATTTCAAATGTGACTCTTCGCCAACCAGCCATGTCGGGTGGCACTGTAACATATGAGGGGCGGTTTGAGATTTTGTCATTGTCAGGTTCCTTTCTACTCAATGATGCTGGAGGAACTCCAACAAGAACTGGTGGCCTTAGTGTTTCACTAGCTGGGTCTGATGGTCGTGTTATTGGGGGCGGTGTGGGAGGTCTTCTCATGGCAGCAAGCCCTGTACAGGTAGTAGTTGGTACCTTCCTAGTTGATAACAAGAAGGATCTTGGGCGGGTTGGAAATGGTGAACCTTCCATCGGCACGTTATCAGGATCTGTTTCAGGGGGGTCTCCTTCACCTTCCGTTGCTGCACAATCTCGGGCAGAAGCTTCTGCTGCTACTAATCTGAGAAAAGGAGCTGAAGGTGAGCAAAATACTGGAGGTAGTAGTTATAATATGCAACCTCAAGGGTTAAGAATGATGTCCCTACAGGACTGGGCAGGTACTCATTTTGGGACCGAAACAAAGAGTGACACAGAGACAGCCTTGACAGGCAGAGCAAAACCAAGGGACCGAGATGATGGATCTAGATTTAACAAAGTGGACCAGGAAGGAGAGCGTAGAGGCCAACATATTACATTTGAGAACTAA___TGTTCTTGAGAAAATGTTTCCTAGAAAGAGGCATTCTGGCATGGTTAGAGGTTGATATAAAAGAGCTGGAGTGTCTTCATAAAGAGAGATTTTTGTATTTTTATTTTTGTCAGCTATTTCCATGTGTTGTAGACTAGATCTCTTTCTTCTGTAAACATAGTGTTTTAATTTTAAAATCTTTCATTGAGAGTCATCTTACCAAAAGTATATTGATGATGCTACATCATAACATGTTGTTCATATTAGATTGTAGCTGTTGGTTATATATCCAAGATTTTAAATTGTAACTACGCATCATTGAATGCCTTTTACCACCAGTGCATGGTAGAATTCCACTTTTCTTCCTATATAGACAATTGTTTTTGATACTTACCTCTGAGAGTCTAAACTCCAAAACTGGGAAACACCCAAATAGATGTAGCTGATTATCTCATAATTTGCGTTAAATGCAGATAGGTAAGCACTGAAT

Fln Alignment:

Contig7423___PQRPMVSPEQSLPMVXXXXXXXXXXXXPLYSEGPTAIFNHPGSGRASLAGSETLKRKRGRPRKYGTDVDGFGNVXXXXXXXXXXFSDKKARGSGKKAQMVALGCAGHGFIPHVITIAAGEDVCKKIMAFMQHGPWAVCVLSANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSFLLNDAGGTPTRTGGLSVSLAXXXXXXXXXXXXXLLMAASPVQVVVGTFLVDNKKDLGRVGNGEPSIGTLXXXXXXXXXXXXXXXXXXXXXXXXTNLRKGAEGEQNTGGSSYNMQPQGLRMMSLQ--DWAGTHFGTETKSDTETALTGRAKPRDRDDGSRFNKVDQEGERRGQHITFEN
D5A9Z4_________________PQRAMLSPEQSLNIVNNNNTANASASSPLYSEGPTAIFSHPGSGRASLAGSETLKRKRGRPRKYGTDVDGFGNVGLGLSSPSSPFSDKKGRGSGKKAQMVALGCAGHGFIPHVITIAAGEDVCKKIMAFMQHGPWAVCVLSANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSFLLTDTGGTHTRTGGLSVSLAGSDGRVIGGGVGGLLMAASPVQVVVGTFLVDNKKDLGRVGNGEPSMGTLSGSMSGGSPSPSIAVQSRAETSAGTNLRKGGEGEQNTGGGTYNMQPQVLTMMSLQSMDWGGAHFEAETKSDTETALTGRTKPRDRDDGSRFKQVDQEEECRGQNITFEN

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
170	16		83		0.994512
171			83	16	0.994512
174		83		16	0.994512
477	20	80			0.995493
481			80	20	0.995493
526	25			75	0.996473
527		80		20	0.995493
571	20		80		0.995493
572	20	80			0.995493
573			80	20	0.995493
608	14	85			0.993533
610		85	14		0.993533
712	12		87		0.992554
716			87	12	0.992554
717		87		12	0.992554
739	14			85	0.993533
740		14	85		0.993533
741	14		85		0.993533
743	85			14	0.993533
843	16	83			0.994512
935	10			90	0.90298
937	10			90	0.90298
941	90			10	0.90298
964	11		88		0.923564
970	11	88			0.923564
973	88			11	0.923564
1124		10		90	0.90298
1132	12	87			0.992554
1133		12		87	0.992554
1135	87			12	0.992554
1139	14			85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain