SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7416

Length: 1927 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene7416

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16190	143/144

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock 70 kDa protein, putative n=1 Tax=Ricinus communis RepID=B9SQC9_RICCO	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	32%
Blast2go	heat shock protein 91	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	82%
Blast2go	response to heat	GO:0009408	Biological Process	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	82%
Blast2go	cell wall	GO:0005618	Cellular Component	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%
Blast2go	cytosol	GO:0005829	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Heat shock protein 70	IPR013126	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRY5

Fln msg: Distance to subject end: 60 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 592 - 652

Fln protein: MSVVGFDVGNESCIVAVARQRGIDVVLNDESKRETPAIVCFGEKQRFIGTAGASSSLMNPKNAVSQIKRLIGKQFRDPEVQRDLQSLPFTVDEGPDGGVRIHARYLGENRVFSATQILAMLLSNLKQIAKTNLKTEVVDCCIGIPIYFTDLQRRAFLDAASIAGLNPLRLMHETTATALAYGIYKTDLPENDPLNVVFVDIGHASMQVCVAAFKKGQLKILAHTYDRSLGGRDFDEVLFRHFADKFKEQYQIDVPTNVRASQRLRAACEKLKKVLSANPEAPLNIECLMDEKDVRGFIKRDEFEQLAQPMLERVKGPCVQALIEAGITVDKIHAVEVVGSGSRVPAILKILTETFGKEPRRTMNASECVARGCALQCAILSPTFKVREFKVQESFPFSIALAWKDSAPEAEDGTLEQRQTKVVFPRGNTLPSTKVFTFLRSGTFTVDILYEDVNQVRAPALISSYMIGPFQTSKGEKAKLKVRVQLDKHGIVSIDSATMIEEEEIEVPVSSVKEGSNDEKETAAMDTDDAQNNGASAAGDNADVNMQDAKNAAGPATAGTATGAENGIPEAEDKAAQMETDAKAKTVKKKVK

Protein Length: 593

Fln nts: CCCCCTTCGCAAAAGAGAAAGTTTTCCCGACTCGTGCCCTCGAAACATTCATTTCTTATATAGCGCGGACAGGGAGCCGAACAGGTCCAGGAATCGATTTCTCTGGTTGGGTAGAGTTTCACAGGCAGAAGATTTTGGTGGTAAGGCGAAA_-_ATGAGCGTTGTAGGGTTTGATGTCGGAAACGAAAGCTGCATTGTTGCCGTTGCACGGCAGCGCGGCATTGATGTCGTGCTTAATGATGAATCGAAGAGGGAAACCCCGGCCATTGTCTGTTTCGGGGAGAAGCAGCGGTTTATTGGCACGGCCGGTGCCTCTTCGTCCCTGATGAATCCGAAGAACGCCGTCTCTCAGATCAAACGGTTGATCGGGAAGCAATTCCGTGATCCCGAAGTGCAGAGGGATTTGCAGAGCTTGCCGTTCACCGTCGATGAAGGGCCCGACGGGGGTGTGCGGATTCACGCGCGGTACCTTGGAGAGAATCGCGTCTTCAGCGCGACTCAGATTCTAGCCATGCTTTTGTCGAACCTTAAGCAAATTGCAAAGACAAATTTGAAAACAGAGGTTGTTGATTGTTGTATTGGGATACCAATTTATTTCACAGATCTCCAAAGAAGAGCGTTTTTGGATGCCGCTTCCATTGCGGGCCTAAATCCTCTCCGCTTGATGCACGAGACCACAGCCACTGCCTTGGCTTACGGCATTTACAAGACTGATCTGCCTGAAAATGATCCGTTGAACGTCGTGTTTGTTGATATCGGCCATGCTAGTATGCAGGTGTGTGTCGCTGCATTTAAAAAGGGCCAGTTGAAGATTCTGGCTCATACCTATGATAGATCTCTGGGTGGGAGGGATTTCGATGAGGTTCTTTTCAGGCATTTTGCTGATAAATTCAAGGAGCAATATCAGATAGACGTGCCAACTAATGTTCGAGCCAGTCAGAGATTGCGGGCTGCTTGCGAGAAGTTGAAGAAAGTCTTGAGTGCTAACCCTGAGGCACCTCTCAATATCGAGTGTTTAATGGATGAAAAAGACGTTAGGGGATTTATCAAACGGGACGAGTTTGAACAACTTGCACAACCGATGCTCGAGCGTGTGAAAGGGCCCTGCGTGCAGGCTTTGATTGAAGCAGGAATTACTGTAGATAAGATTCATGCGGTTGAAGTTGTTGGCTCGGGTTCTCGTGTTCCTGCAATATTAAAAATATTGACCGAGACTTTTGGAAAAGAACCGAGGCGGACTATGAATGCGAGCGAGTGTGTGGCTCGAGGATGTGCTCTCCAGTGTGCTATTCTTAGTCCGACATTCAAAGTGCGCGAATTCAAGGTTCAAGAAAGTTTTCCGTTCTCTATTGCTTTGGCGTGGAAGGATTCTGCTCCCGAGGCTGAAGATGGAACTTTAGAGCAACGGCAAACCAAAGTTGTGTTCCCTAGAGGCAACACATTGCCAAGTACAAAGGTTTTTACATTCTTAAGGTCTGGGACCTTCACAGTAGACATTTTATATGAAGATGTGAACCAAGTTCGGGCGCCTGCACTGATAAGTTCATACATGATTGGTCCTTTTCAGACTTCAAAAGGTGAAAAGGCTAAGCTGAAAGTAAGAGTCCAGTTGGATAAGCATGGAATAGTTTCGATTGATTCAGCAACTATGATTGAGGAAGAAGAAATAGAAGTCCCTGTTTCTAGTGTGAAAGAAGGATCAAATGACGAGAAAGAGACTGCTGCAATGGATACAGATGATGCACAAAACAATGGTGCATCTGCAGCTGGTGACAATGCTGATGTTAATATGCAGGATGCCAAAAATGCTGCTGGACCTGCAACAGCGGGAACTGCCACTGGTGCTGAAAATGGGATTCCTGAGGCAGAGGATAAAGCTGCCCAGATGGAGACTGATGCCAAGGCAAAAACTGTGAAAAAGAAGGTAAAG

Fln Alignment:

Contig7416___KAKMSVVGFDVGNESCIVAVARQRGIDVVLNDESKRETPAIVCFGEKQRFIGTAGASSSLMNPKNAVSQIKRLIGKQFRDPEVQRDLQSLPFTVDEGPDGGVRIHARYLGENRVFSATQILAMLLSNLKQIAKTNLKTEVVDCCIGIPIYFTDLQRRAFLDAASIAGLNPLRLMHETTATALAYGIYK--TDLPENDPLNVVFVDIGHASMQVCVAAFKKGQLKILAHTYDRSLGGRDFDEVLFRHFADKFKEQYQIDVPTNVRASQRLRAACEKLKKVLSANPEAPLNIECLMDEKDVRGFIKRDEFEQLAQPMLERVKGPCVQALIEAGITVDKIHAVEVVGSGSRVPAILKILTETF-GKEPRRTMNASECVARGCALQCAILS--PTFKVREFKVQESFPFSIALAWKDSAPEAEDGTLEQRQTKVVFPRGNTLPSTKVFTFLRSGTFTVDILYEDVNQVRAPALISSYMIGPFQTSKGEKA-----KLKVRVQLDKHGIVSIDSATMXXXXXXXVPVSSVK-EGSNDEKETAAMD
B8LRY5_________________KGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPTVQNDMKLWPFKVISGPAEKPMIVVSYKGEDKQFAAEEISSMVLTKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKATSVGEK---NVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFTQEFKRKYKKDLSSSARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTIHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGL-------ETAGGVM-----TVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTK-DNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQD

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
50	33	66			0.997452
53			33	66	0.997452
188	16			83	0.994512
332	75		25		0.996473
379	14		85		0.993533
380		14		85	0.993533
381	14		85		0.993533
382	85			14	0.993533
421	14	85			0.993533
422		85		14	0.993533
509	12	87			0.992554
530			90	10	0.90298
531		90	10		0.90298
532	90			10	0.90298
618	14			85	0.993533
619		14		85	0.993533
620	14			85	0.993533
668		90		10	0.90298
669			90	10	0.90298
855	12		87		0.992554
858	12		87		0.992554
859	87			12	0.992554
868	12			87	0.992554
869	11	88			0.923564
871			88	11	0.923564
872			88	11	0.923564
1051	10		90		0.90298
1052		10	90		0.90298
1336	23			76	1.0
1340	21		78		1.0
1431		10	90		0.90298
1432	10		90		0.90298
1433		90		10	0.90298
1434	90			10	0.90298
1442	11		88		0.923564
1444	11	88			0.923564
1596			87	12	0.999964
1737	10		90		0.90298
1741		90		10	0.90298
1745	90	10			0.90298
1748		90		10	0.90298
1782	13		86		0.999973
1913	33		66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain