SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7397

Length: 939 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene7397 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9601	24/25

Source	Descriptions	Term	Type	Identity
AutoFact	Nodulin MtN3-like protein [Arabidopsis thaliana] sp\|Q8L9J7.1\|SWET1_ARATH RecName: Full=Bidirectional sugar transporter SWEET1; Short=AtSWEET1 gb\|AAM65929.1\| unknown [Arabidopsis thaliana] gb\|AAO42204.1\| unknown protein [Arabidopsis thaliana] gb\|AAO63896.1	-	-	51%
FL-Next	sp=Bidirectional sugar transporter SWEET1; Arabidopsis thaliana (Mouse-ear cress).	-	-	55%
Blast2go	bidirectional sugar transporter sweet1-like	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	71%
Blast2go	sugar transmembrane transporter activity	GO:0051119	Molecular Function	71%
Blast2go	integral to plasma membrane	GO:0005887	Cellular Component	71%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	RAG1-activating protein-1-related	IPR004316	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3		IPR018169	-	-
Sma3		IPR018179	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
648	16			83	0.994512
898		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain