SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7390

Length: 1270 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene7390

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16589	12/57
SustainPine v2.0	sp_v2.0_unigene24999	44/57

Source	Descriptions	Term	Type	Identity
AutoFact	putative inosine-uridine preferring nucleoside hydrolase, 3'-partial (with alternative splicing) [Oryza sativa Japonica Group]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	probable uridine nucleosidase 2-like	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Inosine nucleosidase.	EC:3.2.2.2	-	0.0	81%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	leaf senescence	GO:0010150	Biological Process	81%
Blast2go	inosine catabolic process	GO:0006148	Biological Process	81%
Blast2go	UDP-glucosyltransferase activity	GO:0035251	Molecular Function	81%
Blast2go	inosine nucleosidase activity	GO:0047724	Molecular Function	81%
Blast2go	cytosol	GO:0005829	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Inosine/uridine-preferring nucleoside hydrolase domain	IPR001910	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKP9

Fln msg:

Fln protein: MADIGVENKRKKIIIDTDPGIDDAMAIFLALQSPEVDVIGLTTIYGNVRTTLATTNALHLLEVAGREDIPVAEGSHTSIKEVPKLRTAAFAHGSDGLGETNIDPPKGKPIAQSASGFLVEKANKFPGEVTVVALGPLTNIALAIKSNPDFPQKIRQIIILGGAFSVNGNVNPATEANIFGDPEAADIVFTCGADIIAIGINITHQVVLTDKDVEDLASSSGKYAKYICNILKFYFDYHHEAYNICGAYLHDPTVMFAAIDPSLMTYAEGVVRVQADGIFRGLTLFDNMKKRWGEVTEWSNKPRVKVAVSVDGDKIVHLLKERLKNS*

Protein Length: 328

Fln nts: AACCACTCTGGTTTGTTTCTCCGAGGTCGAAGGGAAACCGACCGTGCAAAAGTTCTCCCAGTTACATCCTGACTGATACTTCGACGAAACTTGTTTGTTTACTCACAGCTTTCCTCCTGGTTCAGCTGGTGGTGGTGGTGGTGGTGCTTGGATCG_-_ATGGCCGACATAGGCGTGGAGAATAAGAGGAAGAAAATCATTATTGACACTGACCCTGGCATAGATGATGCCATGGCAATCTTTTTGGCTCTTCAGTCTCCAGAGGTTGATGTTATTGGTCTCACTACAATTTATGGAAATGTCCGTACAACTTTGGCAACAACAAATGCCCTTCATCTGTTGGAAGTTGCAGGGAGAGAAGATATCCCTGTCGCAGAAGGTTCACACACATCAATCAAGGAAGTTCCAAAGCTGCGAACTGCAGCTTTTGCCCATGGTTCTGATGGCCTTGGGGAGACCAATATTGACCCACCAAAAGGGAAGCCAATTGCACAATCAGCATCAGGTTTTCTCGTTGAGAAAGCGAATAAATTCCCTGGAGAAGTGACAGTGGTTGCATTGGGGCCACTCACAAACATAGCGTTGGCAATAAAATCAAATCCTGACTTTCCGCAGAAAATAAGGCAGATTATTATTCTTGGGGGAGCATTTTCAGTGAATGGAAATGTTAACCCTGCTACGGAAGCAAATATTTTTGGCGACCCAGAAGCTGCCGATATTGTATTCACATGTGGAGCAGATATCATAGCTATTGGAATCAATATTACACATCAAGTTGTTCTGACAGATAAAGATGTTGAAGATCTGGCAAGCTCCAGTGGGAAATATGCCAAGTATATTTGCAACATTTTGAAGTTCTATTTTGACTATCATCACGAGGCCTACAATATATGTGGAGCCTATCTTCATGATCCTACTGTGATGTTTGCGGCTATTGATCCCTCACTCATGACATACGCAGAAGGTGTAGTTAGAGTCCAGGCAGATGGTATATTCAGGGGCCTCACTCTATTTGATAACATGAAAAAGAGGTGGGGCGAAGTTACGGAGTGGTCGAATAAACCGAGAGTAAAAGTGGCAGTGTCAGTGGATGGTGACAAAATCGTACACTTGCTCAAAGAGCGATTGAAGAACTCCTAG___ATTTAAATTGAATTTTGTCAATTCATAGAAATTAACTGAAATTCGTTCACTTGAGTTCTTTTGAAACAGCTCTGAGATCTTGCAGTTCCTTGTATAAGTCCCCATCGAGTTGTTAAGGCTCTATAGTTGACATT

Fln Alignment:

Contig7390___MADIGVENKRKKIIIDTDPGIDDAMAIFLALQSPEVDVIGLTTIYGNVRXXXXXXXXXXXXEVAGREDIPVAEGSHTSIKEVPKLRTAAFAHGSDGLGETNIDPPKGKPIAQSASGFLVEKANKFPGEVTVVALGPLTNIALAIKSNPDFPQKIRQIIILGGAFSVNGNVNPATEANIFGDPEAADIVFTCGADIIAIGINITHQVVLTDKDVEDLASSSGKYAKYICNILKFYFDYHHEAYNICGAYLHDPTVMFAAIDPSLMTYAEGVVRVQADGIFRGLTLFDNMKKRWGEVTEWSNKPRVKVAVSVDGDKIVHLLKERLKNS
B8LKP9_________________MGDIGVENKRKKIIIDTDPGIDDAMAIFLALQSPEVDVIGLTTIYGNVRTTLATTNALHLLEVAGREDIPVAEGSHTSIKEVPKLRFAAFAHGCDGLGEINIVPPKGKPIPQSASDFLIEKANEFPGEVTVVALGPLTNIAKAIESNADFPQKIRQIVILGGAFSVNGNVNPATEANIFGDPEAADIVFTCGADIIAVGINITHQVVLTDKDLEDLASSSGKYAKYVCNILKFYIDYHLEAYNIRGAYLHDPTVMFVAIDPSLMTYAEGVVRVQADGIFRGLTLFDNMKKRWGEVTEWSNKPSVKVAVSVDGDKIIHLLKERLKNS

SNPs (tot: 3)

Position	A %	C %	G %	Probability
1178	83	16		0.994512
1269	66		33	0.997452
1270		66	33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
127	146	TGG TGG TGG TGG TGG TGG TG	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain