SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7347

Length: 979 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene7347

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22273	2/33
SustainPine v2.0	sp_v2.0_unigene23511	1/33
SustainPine v2.0	sp_v2.0_unigene24893	30/33

Source	Descriptions	Term	Type	Identity
AutoFact	Putativepod-specific dehydrogenase SAC25 n=5 Tax=Arabidopsis RepID=Q8LCE7_ARATH	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	retinol dehydrogenase	-	-	83%

Source	InterPros	Term	Type	Identity
Sma3	NIF system FeS cluster assembly, NifU, C-terminal	IPR001075	-	-
Sma3	Actinin-type, actin-binding, conserved site	IPR001589	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Mlo-related protein	IPR004326	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A841

Fln msg: Distance to subject end: 58 aas, your sequence is shorter than subject: 259 - 317

Fln protein: MMGLLSLVTGKAGSSGFGSASTAEEVTEGIDASNITAIVTGGASGIGAETVRVLALRGAHVIIGVRNVEAGKAVKDDILRQIKGARVDVLPLDLSSMESVKKFANDFHALNLPLNILINNAGVMFCPFKLSEDGLEMQFATNHVGHFLLTNLLLDNMKKTAKETGVEGRVVNLSSVAHFLTYEEGIRFDKINDESGYSDKKAYGQSKLANILHAKELSRRLKEEGANVTANSIHPGFIMTNLMRHSMNLIEIFEVFLSF

Protein Length: 260

Fln nts: AATGTCATTTAGTGTATCCTTTATTCTCGGCTGTGCAAGATCACAAATGTTCATGCCTTTCTTTTTGGTTTTGTTGGTTGGGAGAGCGTTGATGCGAATTTGAGATTGATATATACCAGGATCATTTTATAGCGCCAGATTCTCAACAGAATCCTATTCTCATCGACGATTTATTGTTGCTCACTATCGGTTTTAATTCA_-_ATGATGGGACTTCTTTCGCTTGTAACGGGAAAGGCTGGTTCCAGTGGGTTTGGATCGGCCTCCACTGCTGAAGAAGTTACTGAAGGAATCGATGCTTCGAATATCACAGCAATTGTCACTGGGGGAGCGAGTGGAATTGGAGCGGAGACTGTGAGAGTACTGGCACTACGAGGTGCGCATGTGATCATTGGTGTAAGGAATGTGGAAGCTGGGAAGGCTGTTAAAGATGATATTCTTAGACAGATTAAGGGCGCTCGAGTCGATGTTTTGCCACTGGATTTGTCCTCCATGGAATCTGTCAAGAAGTTCGCTAATGATTTTCACGCCTTGAACCTTCCGCTCAATATTTTAATAAATAATGCTGGGGTTATGTTTTGCCCCTTCAAGCTTTCAGAGGATGGCCTAGAGATGCAATTTGCAACAAATCATGTAGGCCATTTCCTATTGACAAATTTGCTGCTTGATAACATGAAAAAGACTGCAAAAGAGACCGGAGTTGAAGGACGGGTTGTGAATCTTTCATCCGTTGCACACTTTCTTACATATGAAGAAGGGATACGGTTCGACAAGATAAATGATGAGAGTGGATATTCAGATAAAAAAGCGTATGGGCAATCCAAGTTAGCCAACATTTTGCATGCCAAGGAGTTGTCACGGCGCTTAAAGGAGGAAGGAGCAAATGTCACTGCAAACTCAATTCATCCGGGATTCATTATGACTAATTTGATGCGGCATTCCATGAATCTAATAGAGATTTTTGAAGTTTTTCTCTCGTTTCC

Fln Alignment:

Contig7347___MGLLSLVTXXXXXXXXXXXXXXEEVTEGIDASNITAIVTGGASGIGAETVRVLALRGAHVIIGVRNVEAGKAVKDDILRQIKGARVDVLPLDLSSMESVKKFANDFHAXXXXXXXXXXXAGVMFCPFKLSEDGLEMQFATNHVGHFLLTNLLLDNMKKTAKETGVEGRVVNLSSVAHFLTYEEGIRFDKINDESGYSDKKAYGQSKLANILHAKELSRRLKEEGANVTANSIHPGFIMTNLMRHSMNLIEIFEVFLSF
D5A841_________________MGLLSLVTGKAGSSGFGSASTAEEVAQGINASNLTAIVTGGASGIGAETVRVLALRGAHVIIGVRNVDAGKAVKDDILRQTKGARVDVLPLDLSSMESVKKFANDFHALNLPLNILINNAGVMFCPFKLSEDGLEMHFATNHVGHFLLTNLLLDNMKKTAKETGVEGRVVNLSSVAHFLTYDEGIQFNRINDESGYSDKKAYGQSKLANILHAKELSRRLKEEGANVTANSVHPGFIMTSLMRHSMNLMRFLNFFSRF

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
52	25	50			0.995533
388	11			88	0.923564
391			88	11	0.923564
394	11			88	0.923564
395	88	11			0.923564
397			88	11	0.923564
398			88	11	0.923564
555	83	16			0.994512
558	87			12	0.992554
579	20	80			0.995493
581	20	80			0.995493
589	25			75	0.996473
681	11		88		0.923564
684	88			11	0.923564
685	88			11	0.923564
716	14			85	0.993533
718	14			85	0.993533
747	16		83		0.994512
748	83	16			0.994512
750			83	16	0.994512
751	83			16	0.994512
772	12			87	0.992554
773	87			12	0.992554
774	87		12		0.992554
775	87			12	0.992554
795		12	87		0.992554
798	71			14	0.984337
818		87	12		0.992554
819	87			12	0.992554
857	14		85		0.993533
860	14	85			0.993533
874		12	87		0.992554
876			88	11	0.923564
877		88		11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain