SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7308

Length: 1116 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene7308 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10904	16/19
SustainPine v2.0	sp_v2.0_unigene18907	3/19

Source	Descriptions	Term	Type	Identity
AutoFact	transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb\|AAM13156.1\| unknown protein [Arabidopsis thaliana] gb\|AAN15609.1\| unknown protein [Arabidopsis thaliana] gb\|AEE29984.1\| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana]	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	23%
Blast2go	transducin family protein	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of abscisic acid mediated signaling pathway	GO:0009788	Biological Process	76%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	76%
Blast2go	protein binding	GO:0005515	Molecular Function	76%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	76%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	76%
Blast2go	nucleus	GO:0005634	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LS29

Fln msg: your sequence is shorter than subject: 277 - 421

Fln protein: TVYASVGDYGAALWRIPEHSEHSNVPQLDQLARFDAHTHKIKCVLWWPSGKHDQLVSIDEETIYLWSLDSSTMSAKVLSQEPADMLHYLSGGAWDPHDINVLSTACKSSVQCWDLRSMKKINSIEHSQVRDLDYNPNKQHIVVTTGDDSRIRIWDLRMSKMPLKELTGHSHWTWRVRYNPMYDELILSAGTDSTVNLWQTSPIKSGDSTPGSWVDSPPSLVDPLIRSYNDFEDSVYGLAWSSQEPWIFASLSYDGRVVVDSVPQNIRKDMKKKSKV*

Protein Length: 278

Fln nts: CTACAGTTTATGCTTCAGTGGGTGATTATGGAGCTGCTTTGTGGAGAATTCCAGAACATTCTGAGCACTCTAATGTTCCTCAATTAGATCAGCTTGCCCGCTTCGATGCACATACACATAAGATAAAATGTGTTCTGTGGTGGCCATCGGGGAAGCATGATCAATTGGTGAGCATTGATGAAGAGACAATTTACTTGTGGAGCTTAGATTCGTCAACAATGTCTGCGAAGGTACTATCTCAGGAGCCAGCTGACATGCTACATTACTTGTCTGGGGGTGCATGGGATCCGCATGATATAAATGTTCTTTCAACTGCTTGCAAGTCCTCTGTTCAGTGTTGGGATCTACGCTCAATGAAAAAGATAAATTCAATAGAGCATTCACAAGTTCGTGACTTGGATTACAATCCCAATAAGCAACATATTGTTGTCACAACGGGAGACGATTCTAGAATACGTATATGGGATTTGCGGATGTCGAAGATGCCTCTCAAAGAACTTACTGGGCATTCTCATTGGACATGGCGTGTGAGATATAACCCTATGTATGATGAGCTTATTTTGAGTGCAGGTACAGACTCAACTGTGAATTTGTGGCAGACTTCTCCAATTAAATCTGGAGATTCGACACCAGGAAGTTGGGTAGATTCACCTCCAAGCCTAGTTGATCCTCTAATACGGTCATACAATGACTTTGAAGATAGTGTCTATGGTCTCGCTTGGAGTTCTCAAGAACCTTGGATCTTTGCTTCCCTATCATATGACGGAAGAGTGGTGGTGGATTCTGTGCCTCAAAATATACGCAAGGACATGAAGAAAAAGTCAAAAGTGTAG___CAGCAGTAAATATTGCAAATGCCACAGTATTCCTACAGATTTAGTAGAAAATTGCCTGAACAAGTTAGAGACATCAGTTATGTAACGAGTAGGAATCATTACAATACATGGGAGAAAATCACTAGTTGCAGGATCATTACTTGATACTGTCATATTCACGTATACGTACTGCAGGCTAAAATTTGCTGCATGGTATTTTGAGGTAGGAACCATCCACGCAACAGTAGGAAGAATTGTTCTCTATTAATCATGTCATGATTCGTCTTGAAAGTGCACCAAAATA

Fln Alignment:

Contig7308___LWWPSGKHDQLVS-IDEETIYLWSLDSSTMSAKVLSQEPADMLH--YLSGGAWD-PHDINVLSTACKSSVQCWDLRSM---KKINSI--EHSQVRDLDYNPNKQHIVVTTGDDSRIRIWDLRMSKMPLKELTGHSHWTWRVRYNPMYDELILSAGTDSTVNLWQTSPIKSGDSTPGSWVDSPPSLVDPLIRSYNDFEDSVYGLAWSSQEPWIFASLSYDGRVVVDSVPQNIRKD
B8LS29_________________LSWSPFKHGHLLSGSDDAQICLWDINAPAKN-KVLEAQQIFKVHEGVVEDVAWHLRHEYLFGSVGDDRHLLIWDLRTSAANKPLHSVVAHQGEVNCLAFNPFNEWVLATGSADRTVKLFDLRKITSALHTFSCHKEEVFQIGWSPKNETILASCSADRRLMVWDLSRI-DDEQTPEDAEDGPPE----LLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENIYHD

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
59	33			66	0.997452
62		66	33		0.997452
69		33	66		0.997452
147	16			83	0.994512
148		85		14	0.993533
149	85		14		0.993533
150	85			14	0.993533
244	40	60			1.0
249	60	40			1.0
269	25		75		0.996473
939	14			85	0.993533
940	14		85		0.993533
942		85	14		0.993533
1008		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain