SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7294

Length: 874 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene7294

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6228	19/19

Source	Descriptions	Term	Type	Identity
AutoFact	RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] gb\|AEE31132.1\| RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana]	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	ring fyve phd zinc finger-containing protein	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	signal transduction	GO:0007165	Biological Process	76%
Blast2go	phosphatidylinositol binding	GO:0035091	Molecular Function	76%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	76%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, FYVE-type	IPR000306	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	NLI interacting factor	IPR004274	-	-
Sma3	Ysc84 actin-binding domain	IPR007461	-	-
Sma3	Cleft lip and palate transmembrane 1	IPR008429	-	-
Sma3	Dullard phosphatase domain, eukaryotic	IPR011948	-	-
Sma3	Zinc finger, FYVE-related	IPR017455	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMY3

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 557 and 557, Distance to subject end: 42 aas, your sequence is shorter than subject: 291 - 489

Fln protein: DTTFSTAMDILDAEPTKWIADSAASACMLCNSRFHPIMCPRHHCRFCGGIFCGVCSRGRSLLPERFRTSEPQRVCDVCWVRLESVQGLLIKKVSRAAQPATHDVTDLSTLRSWLNFPWGQSMEYEIYKATNTLRSFVKVGSLRPERSIPDAVLRRAKGLCILTVVKVGMMVTYKAGTGVVIARKxxGSWSSPSAVSSFGVGWGAQAGGELTDFIIVLRTDEAVKTFSGNIHFSIGAGLSAAAGPVGRAVEADIRAGDGGSAACYTYSCSKGAFVGCSLEGNMVTTRNSTNA

Protein Length: 292

Fln nts: CAGATACAACTTTTAGTACTGCAATGGATATTTTGGATGCTGAACCTACAAAATGGATAGCTGACAGCGCAGCTTCTGCTTGCATGCTGTGTAATTCACGATTTCACCCAATCATGTGTCCAAGGCATCACTGTAGATTCTGTGGTGGAATTTTCTGCGGCGTCTGTTCCAGGGGAAGGAGCTTGCTACCTGAGAGATTTCGTACCAGTGAACCTCAACGAGTATGTGATGTATGCTGGGTGAGGTTGGAATCAGTACAAGGTCTTTTGATTAAAAAGGTGAGCCGTGCAGCACAACCAGCAACGCATGATGTGACGGATTTAAGCACCCTCAGATCTTGGTTGAATTTTCCTTGGGGACAGTCCATGGAGTATGAAATTTATAAGGCCACCAACACTCTACGGAGCTTTGTCAAGGTCGGTTCTCTCAGACCAGAAAGATCCATCCCAGATGCTGTTTTACGACGAGCAAAAGGTTTGTGTATTCTCACAGTTGTCAAAGTTGGTATGATGGTCACTTATAAGGCTGGAACAGGAGTGGTTATTGCTCGAAAGxxxxxxGGGTCATGGTCTTCACCATCTGCTGTCTCTTCCTTTGGTGTTGGTTGGGGAGCACAGGCTGGAGGAGAGCTGACAGATTTTATAATCGTGCTTCGAACGGATGAGGCAGTAAAGACTTTTAGTGGAAACATTCACTTCTCAATAGGTGCTGGGCTCAGCGCAGCTGCCGGGCCTGTTGGAAGAGCAGTTGAAGCAGATATACGTGCTGGAGATGGTGGCTCTGCAGCTTGTTACACCTACAGTTGTAGCAAAGGTGCATTTGTTGGTTGCTCCCTTGAAGGGAATATGGTTACTACTCGAAACTCAACAAATGCA

Fln Alignment:

Contig7294___ILDAEPTKWIADSAASACMLCNSRFHPIMCPRHHCRFCGGIFCGVCSRGRSLLPERFRTSEPQRVCDVCWVRLESVQGLLIKKVSRAAQPATHDVTDLSTLRSWLNFPWGQSMEYEIYKATNTLRSFVKVGSLRPERSIPDAVLRRAKGLCILTVVKVGMMVTYKAGTGVVIARKEDGSWSSPSAVSSFGVGWGAQAGGELTDFIIVLRTDEAVKTFSGNIHFSIGAGLSAAAGPVGRAVEADIRAGDGGSAACYTYSCSKGAFVGCSLEGNMVTTRNSTN
B8LMY3_________________IFETEPPHWVPDSAASCCMQCGVPFKPLVCGRHHCRFCGGLFCRACSRGKCLLPVKFRERDPQRVCDSCYERLEPLQRLLIRQVSNAAQIAKHDVMDWTCMRGWLNTPLGLSMEQEIYKSSNVLRSYCQIAMLKPERSIPVSVLRGANGLAIFTVAKAGVGITYKLGTGIVIARRENGSWSAPSAIASFGLGWGAQIGGELTDFVIVLRNFEAVKAFSSRVHFSLGGGLSVAAGPLGRVVEADLRAGDEGTTACYTYSSSKGAFLGVSLEGNIVTARSDTN

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
191	80		20		0.995493
266	40			60	1.0
268	50			50	1.0
332	33	66			0.997452
333		66		33	0.997452
445	25	75			0.996473
448	25			25	0.995533
541	20		60	20	0.99255
702		50		50	1.0
760		14	85		0.993533
780		50		50	1.0
821	33		66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain