SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7290

Length: 526 nt

UniGene Fasta

>biog3_v1.0_unigene7290
GTCCCGGTTGGATGATATGAAGGGGAAGGTTCAAAGTCTTGTAGATCTCTCTTCAAGCTTTTTCCTACTAGAATCTATTTACAGCAGCCACAGGATGAAAACATGGCCATGGATTGGAACCAACAATTGGAACAAGATATTGAAAGACTAAAGGCAGAAGCCAATAGGCAACAACTTCGCATGGTCATGGGATCTTCAGGCATCACATGTAAAGATCTGACGGAACTTGACATTAAGAACCACATTCTAACTTATGATATGGCAGAAAAGGTGGTAGGATGGGCTGTAAGCCGCCAGTTGCAGAAAGATGCGGAACCAGTTTTATTTAATGGAAAGCTGGTTATAACTGCTGAAAGCATGCAGAATACCCTTACAGAGCTTCTATCTGTGCAACGAGCTTCACCACTTAAAAAATCTTTGAAGGATGTTACATGTGACAATGAGTTTGAGAAGATACTAATATCTGAAGTTATTCCACCGGATGAACTAGGAGTCACGTTTGATTGTATTGGAGCCCTTGACAACG

Ace file of the UniGene biog3_v1.0_unigene7290

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11889	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	AAA-type ATPase family protein [Arabidopsis thaliana] dbj\|BAF01763.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE82177.1\| AAA-type ATPase family protein [Arabidopsis thaliana]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	63%
Blast2go	protein	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	0.0	80%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	80%
Blast2go	Thiamine metabolism	00730	80%
Blast2go	Metabolic pathways	01100	80%

Source	GOs	Term	Type	Identity
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%
Blast2go	plastid	GO:0009536	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8QYJ9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 297 aas, your sequence is shorter than subject: 175 - 600

Fln protein: VPVG*YEGEGSKSCRSLFKLFPTRIYLQQPQDENMAMDWNQQLEQDIERLKAEANRQQLRMVMGSSGITCKDLTELDIKNHILTYDMAEKVVGWAVSRQLQKDAEPVLFNGKLVITAESMQNTLTELLSVQRASPLKKSLKDVTCDNEFEKILISEVIPPDELGVTFDCIGALDN

Protein Length: 176

Fln nts: GTCCCGGTTGGATGATATGAAGGGGAAGGTTCAAAGTCTTGTAGATCTCTCTTCAAGCTTTTTCCTACTAGAATCTATTTACAGCAGCCACAGGATGAAAACATGGCCATGGATTGGAACCAACAATTGGAACAAGATATTGAAAGACTAAAGGCAGAAGCCAATAGGCAACAACTTCGCATGGTCATGGGATCTTCAGGCATCACATGTAAAGATCTGACGGAACTTGACATTAAGAACCACATTCTAACTTATGATATGGCAGAAAAGGTGGTAGGATGGGCTGTAAGCCGCCAGTTGCAGAAAGATGCGGAACCAGTTTTATTTAATGGAAAGCTGGTTATAACTGCTGAAAGCATGCAGAATACCCTTACAGAGCTTCTATCTGTGCAACGAGCTTCACCACTTAAAAAATCTTTGAAGGATGTTACATGTGACAATGAGTTTGAGAAGATACTAATATCTGAAGTTATTCCACCGGATGAACTAGGAGTCACGTTTGATTGTATTGGAGCCCTTGACAACG

Fln Alignment:

Contig7290___YEGEGSKSCRSLFKLFPTRIYLQQPQDENMAMDWNQQLEQDIERLKAEANRQQLRMVMGSSGITCKDLTELDIKNHILTYDMAEKVVGWAVSRQLQKDAEPVLFNGKLVITAESMQNTLTELLSVQRAS-PLKKSLKDVTCDNEFEKILISEVIPPDELGVTFDCIGALDN
D8QYJ9_________________YKPDGSKCSRMLAKLFPSKIYVQQPQDENMLLVWNRQLEQDTERLKAEANRQLLRIIMSTSNVECNDLSTINIQTHLLTHDMAEKVVGWGISHHLQHHVEPLHRNGKIVIKAESLEHSLAELQAIQRGSTQRKKTLKDVVCDNEFEKILLPEVIPPDEIRVTFDHIGALDN

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
92	66	33			0.997452
95	66		33		0.997452
225	75	25			0.996473
226	25	75			0.996473
229	20		80		0.995493
231		80		20	0.995493
232	80		20		0.995493
389		33		66	0.997452
390	33		66		0.997452
392			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain