SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7276

Length: 1719 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene7276 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene459	24/36
SustainPine v2.0	sp_v2.0_unigene8446	12/36

Source	Descriptions	Term	Type	Identity
AutoFact	putative protein kinase 2 [Oryza sativa Japonica Group]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	probable receptor-like protein kinase at1g80640-like	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	78%
Blast2go	signal transducer activity	GO:0004871	Molecular Function	78%
Blast2go	ATP binding	GO:0005524	Molecular Function	78%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	78%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Uncharacterised protein family UPF0197	IPR007915	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AA69

Fln msg: Overlapping hits, possible frame ERROR between 823 and 805, and overlapping frame ERROR between 1041 and 975, your sequence is shorter than subject: 502 - 587

Fln protein: SSAPSIRTFTSTSPRPSFFKPGMSVCPMASICKCTAKSIFACFSECISPGPSPSQSFLKAAKSVAPVATMSTTLQQTKPLKSTRHEIQHLKVLIIVAIALVLLILGAIIILFTYWTCTWVSRSRLCPVLPSSQPPALRKQSDIDDSDVNNGMSLGPLLTRFSSFRTGKRKGCASAIEYSVLQAATNNFSSYNLLGQGGFGSVYRAQFPDDFCVAVKMLDENRKQADDEFQSEVELMSKIRHPNLVSLLGFCVHGKRRLLVYELMQKRxxxxxxxxGPSHGSALTWHLRMKIALDTARGLEHLHDHCNSSIIHSDFKSANILLDxxxxxxxxxxxxxxxxxxxxxxxxxELLGTLGYLAPEYLSDGKLTEKSDVYAFGVVLLELITGRKPVDKSMPAGCQSLVTWAKPQLTDRSKLPTIVDPMMKETVHLKHLYQVAAVAVVCVQTEPDYRPLITDVVHSLMPLVPVELGGALKNAKALSDNETKSLVAANLSTKTTGKTEL*

Protein Length: 503

Fln nts: TTCATCTGCTCCTTCCATAAGAACATTTACAAGCACAAGCCCAAGGCCATCTTTTTTCAAACCAGGTATGTCCGTGTGTCCTATGGCTTCAATCTGTAAGTGTACTGCCAAATCTATTTTCGCATGTTTCAGTGAATGTATAAGCCCAGGCCCAAGCCCAAGCCAATCTTTTCTCAAAGCAGCTAAGTCCGTGGCTCCTGTGGCTACAATGTCAACAACCCTACAGCAAACAAAGCCCCTGAAGTCTACTAGACATGAAATTCAACATCTCAAAGTTCTGATCATTGTGGCCATTGCTCTTGTGCTCCTCATTTTAGGGGCCATCATCATCCTTTTCACATATTGGACTTGTACATGGGTGTCCAGGAGTCGTTTATGTCCAGTTCTTCCATCATCTCAACCTCCAGCATTACGAAAACAGTCAGATATTGATGACTCAGATGTCAATAATGGAATGTCACTTGGCCCCTTACTTACTCGTTTCAGCTCTTTCAGAACTGGTAAAAGGAAGGGATGCGCATCTGCTATAGAGTATTCTGTTTTACAAGCAGCTACAAATAATTTTAGTAGCTATAACCTCCTTGGGCAGGGAGGCTTTGGTTCTGTATACAGAGCTCAGTTCCCTGATGATTTTTGTGTTGCGGTCAAGATGCTAGATGAAAACAGAAAACAGGCAGACGATGAATTTCAGAGTGAAGTTGAACTAATGAGCAAAATCAGGCATCCAAACCTCGTGTCTTTGTTGGGTTTCTGTGTCCATGGGAAGAGAAGGCTGCTAGTATACGAGCTTATGCAAAAACGGxxxxxxxxxxxxxxxxxxxxxxxxGGTCCATCTCATGGATCTGCACTTACATGGCATCTGCGTATGAAGATTGCTCTTGATACGGCCAGGGGTCTAGAGCATCTGCATGATCACTGCAATTCATCAATAATTCATAGTGATTTTAAATCAGCTAATATCCTTCTGGATGCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGAGCTATTAGGAACCCTGGGATATCTAGCTCCAGAGTACCTTTCTGATGGGAAACTGACGGAGAAAAGTGATGTTTATGCATTTGGAGTTGTTCTATTGGAGTTGATTACTGGCAGAAAACCTGTTGACAAATCTATGCCAGCTGGTTGCCAATCTCTTGTTACATGGGCCAAGCCACAGTTGACAGATAGGTCAAAGCTTCCAACAATTGTGGATCCTATGATGAAAGAGACTGTGCATTTGAAACACCTATATCAAGTGGCAGCTGTTGCTGTTGTTTGTGTGCAAACAGAGCCTGATTATAGACCACTTATAACTGATGTTGTACATTCTCTTATGCCTCTTGTACCGGTAGAGCTTGGAGGGGCGTTAAAGAACGCAAAAGCACTATCTGACAATGAGACGAAATCACTGGTTGCTGCTAATTTAAGTACCAAAACAACCGGGAAGACGGAACTATAAGCAGATATTAGTGCCCATTGGGATGGGAATGTATATTTTTCTTAATATTGTGTTTGTACGGTGACTTTATATTATATTAAGTGCTGCTTAAGTACTAGTACATTTATACCAAATTTTCTTGGCAACTTTTAAGGTTAAGATGGAAGTTACTATTGATTGAAATTTTGTTTCGGTTGACGATTTGTCAACTGGCATTCAAGCAGCAATGTACATT

Fln Alignment:

Contig7276___PGMSVCPMASICKCTAKSIFACFSECISPGPSPSQSFLKAAKSVAPVATMSTTLQQTKPLKSTRHEIQHXXXXXXXXXXXXXXXXXXXXXLFTYWTCTWVSRSRLCPVLPSSQPPALRKQSDIDDSDVNNGMSLGPLLTRFSSFRTGKRKGCASAIEYSVLQAATNNFSSYNLLGQGGFGSVYRAQFPDDFCVAVKMLDENRKQADDEFQSEVELMSKIRHPNLVSLLGFCVHGKRRLLVYELMQKRxxxxxxxGPSHGSALTWHLRMKIALDTARGLEHLHDHCNSSIIHSDFKSANILLDASxxxxxxxxxxxxxxxxxxxxxxxELLGTLGYLAPEYLSDGKLTEKSDVYAFGVVLLELITGRKPVDKSMPAGCQSLVTWAKPQLTDRSKLPTIVDPMMKETVHLKHLYQXXXXXXXXVQTEPDYRPLITDVVHSLMPLVPVELGGALKNAKALSDNETKSLVAANLSTKTTGKTEL*ADI
D5AA69_________________PGPAVLPSIRHSSAPSTRIF------ISPSLSPS--FLSAAKSVAPMASMSTSLQQAKSLKSTKQEMQHLKVLSLVAIPITLLILGAILL-FTYYT--WVSRSRLCPVLPPSQPQALRKQSDNDDSDANNGMSIGPFLTRLSSFRTGKRKGCASAIEYSVLQAATNNFSSYNFLGKGGFGSVYRAQFHDDFCVAVKMLDENRKQADNEFQSEVELMSKIRHPNLVSLLGFCVHGKTRLLVYELMQNGxxxxxxxGPSHGAALTWHLRMKIALDTARGLEHLHEHCNSSIIHSDFKSANILLDASxxxxxxxxxxxxxxxxxxxxxxxELLGTLGYLAPEYLFDGKLTEKSDVYAFGVVLLELITGRKPVDKSMPAGCQSLVTWAKPQLTDRSKLPTIVDPMIKETMHLKHLYQVAAVAVLCVQNEPDYRPLITDVAKSLMPLVPVELGGALKNAKALSATEMKPLVAANLSTKTTEKTELKAQI

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
887	33	66			0.997452
1087	20	80			0.995493
1088			80	20	0.995493
1089		80		20	0.995493
1111		75		25	0.996473
1150	42		57		1.0
1152			57	42	1.0
1175	14			85	0.993533
1176		14	85		0.993533
1178	85			14	0.993533
1276	11			88	0.923564
1297	11	88			0.923564
1300		88	11		0.923564
1456		83		16	0.994512
1457			16	83	0.994512
1462		16	83		0.994512
1465			83	16	0.994512
1500	25		75		0.996473
1501		25		75	0.996473
1654		33	66		0.997452
1655	33	66			0.997452
1656		66		33	0.997452
1657	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain