SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7272

Length: 579 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene7272 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2763	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	Hydroxyacylglutathione hydrolase 2 [Arabidopsis thaliana] gb\|AEC08531.1\| Hydroxyacylglutathione hydrolase 2 [Arabidopsis thaliana]	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	glyoxalase ii	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydroxyacylglutathione hydrolase.	EC:3.1.2.6	-	0.0	80%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Pyruvate metabolism	00620		0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	methylglyoxal catabolic process to D-lactate	GO:0019243	Biological Process	80%
Blast2go	iron ion binding	GO:0005506	Molecular Function	80%
Blast2go	hydroxyacylglutathione hydrolase activity	GO:0004416	Molecular Function	80%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	80%
Blast2go	chloroplast	GO:0009507	Cellular Component	80%
Blast2go	mitochondrion	GO:0005739	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-B, conserved site	IPR001018	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Beta-lactamase-like	IPR001279	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	3-beta hydroxysteroid dehydrogenase/isomerase	IPR002225	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Reticulon	IPR003388	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	DNA-binding WRKY	IPR003657	-	-
Sma3	Paired amphipathic helix	IPR003822	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	DNA repair metallo-beta-lactamase	IPR011084	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3		IPR015748	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Hydroxyacylglutathione hydrolase	IPR017782	-	-
Sma3	Transcription regulator, HTH DeoR-type, conserved site	IPR018356	-	-

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	G %	T %	Probability
465	20		80	0.995493
469		80	20	0.995493
549	33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain