SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7260

Length: 1083 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene7260

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14610	45/46

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase Ck2 regulatory subunit 2 [Nicotiana tabacum]	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	protein	-	-	77%

Source	InterPros	Term	Type	Identity
Sma3	Casein kinase II, regulatory subunit, alpha-helical	IPR016149	-	-
Sma3	Casein kinase II, regulatory subunit, beta-sheet	IPR016150	-	-
Sma3	Casein kinase II, regulatory subunit	IPR000704	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPQ3

Fln msg: Overlapping hits, possible frame ERROR between 848 and 826,

Fln protein: MYKDRNTSTEGRTGASKSELGTLRDPSDRKRINDALDKHLHLEKSPPSTSKGANGRLSIPSTSAGRRGPGDSRNASGLDKTNYAEDVVNSDTDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSNDDILTEEQNELVESAAEMLYGLIHVRYILTSKGMNAMLEKYKNTDFGRCPRVYCSGQPCLPVGQSDIPRTSTVKIYCPKCEDVYYPRSKYQGNSDTDGAKFGxxxxxxxxxVTYAHIKPSRPMQSYVPKIFGFKIHKSAR*

Protein Length: 302

Fln nts: AATGTAATTATTTAATCATCACAGTAGGTTGGGAGGAC_-_ATGTACAAGGACCGGAACACGTCAACGGAAGGCAGAACGGGGGCGTCAAAGTCAGAACTGGGCACTCTTCGGGATCCATCAGATCGGAAACGGATCAACGATGCACTGGATAAGCATCTGCATCTGGAGAAGTCGCCGCCCTCCACTTCAAAGGGAGCCAATGGCCGTTTGTCGATCCCATCGACATCGGCTGGGCGGCGTGGCCCGGGAGACTCACGGAATGCTAGCGGTTTAGACAAGACAAATTACGCTGAAGATGTGGTGAACTCTGATACAGATAGCGAAGAATCAGATGTCAGCGGTTCTGATGGAGATGACACATCCTGGATCTCTTGGTTCTGTAATTTAAGAGGCAATGAGTTCTTTTGTGAAGTTGATGATGAGTACATTCAGGATGATTTCAACCTTTGTGGACTTAGTAGCCAAGTTCCATACTATGATTATGCCCTTGACCTGATTTTGGATGTGGAGTCATCTAATGATGATATCTTAACCGAGGAACAGAATGAGTTGGTGGAGTCGGCTGCAGAAATGTTGTATGGATTGATCCATGTCCGTTATATTTTAACAAGCAAGGGAATGAATGCCATGCTAGAGAAGTACAAGAATACTGATTTTGGAAGATGCCCAAGAGTTTACTGTTCAGGGCAACCGTGTCTTCCAGTTGGCCAATCTGACATTCCCCGGACAAGCACAGTGAAGATTTACTGTCCAAAGTGTGAAGATGTTTACTATCCAAGATCGAAGTATCAAGGCAATTCAGATACCGATGGAGCAAAGTTCGGAxxxxxxxxxxxxxxxxxxxxxxxxxxxGTGACATATGCACACATAAAGCCATCCAGGCCAATGCAGAGCTATGTTCCAAAGATCTTTGGTTTTAAAATCCACAAAAGTGCACGATGA___ACCAAGTATAATGATGTAACTGTAGTTAGTTGTGACAAGCAGTAGCTCTTGCCCACGAGGGTTGTACTTCATATTATTTTACATTAAATTGTTTAAGATATAAGTTAATGTGATTGTCACCTCCATTATGGCCATGTACACATT

Fln Alignment:

Contig7260___MYKDRNTSTEGRTGASKSELGTLRDPSDRKRINDALDKHLHLEKSPPSTSKGANGRLSIPSTSAGRRGPGDSRNASGLDKTNYAXXXXXXXXXXXXXXXXXXXXXXXXWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSNDDILTEEQNELVESAAEMLYGLIHVRYILTSKGMNAMLEKYKNTDFGRCPRVYCSGQPCLPVGQSDIPRTSTVKIYCPKCEDVYYPRSKYQGNSDTDGAKFGTTFxxxxxYF*VTYAHIKPSRPMQSYVPKIFGFKIHKSAR
B8LPQ3_________________MYKDRSTATEGRTGASKSELGTLRDPSDRKRINDALDKHLHLEKSPPSTSKGLNGRLSIPSTSAGRRAPGDSRNASALDKTNYAEDVEDSDTDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSNDDILTEEQNELVESAAEMLYGLIHVRYILTSKGMNAMLEKYKNTDFGRCPRVYCSGQPCLPVGQSDIPRTSTVKIYCPKCEDVYYPRSKYQGN--TDGAYFGTTFxxxxx---MTYAHIKPSRPMQSYVPKIFGFKIHKSAR

SNPs (tot: 3)

Position	A %	G %	T %	Probability
940	20	80		0.995493
944	80		20	0.995493
1025	50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain