SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7252

Length: 1415 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene7252

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10752	32/48
SustainPine v2.0	sp_v2.0_unigene17591	11/48
SustainPine v2.0	sp_v2.0_unigene25843	5/48

Source	Descriptions	Term	Type	Identity
AutoFact	allene oxide cyclase [Pisum sativum]	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	allene oxide cyclase	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Allene-oxide cyclase.	EC:5.3.99.6	-	0.0	84%

Source	KEGGs	Term	Identity
Blast2go	alpha-Linolenic acid metabolism	00592	84%
Blast2go	Biosynthesis of plant hormones	01070	84%
Blast2go	Metabolic pathways	01100	84%

Source	GOs	Term	Type	Identity
Blast2go	jasmonic acid biosynthetic process	GO:0009695	Biological Process	84%
Blast2go	allene-oxide cyclase activity	GO:0046423	Molecular Function	84%
Blast2go	chloroplast	GO:0009507	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Allene oxide cyclase	IPR009410	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABJ9

Fln msg:

Fln protein: MAAAGTATSILSKSSLGNNKGLVRLVRSNSEINNIGLRPATCFNPLKGDIFGAQLAPKMVMTERQIQFDNSSLVRVRAEAKVSMSLRHRVKANAASAQGPPSSSVQELHVYEINELDRGSPAYLRLSQKPVNNLGDLVPFSNKLYSGNLQKRIGITAGLCILIQHFPEKNGDRYEAIYSFYFGDYGHISVQGPYLTYEESYLAITGGSGIFSGVRGQVKLKQIVFPFKLFHTFYLEGIPSLPETLLGEPVFPTPDVEPSPAAKNVEAHACLPNYTQ*

Protein Length: 278

Fln nts: AATGTCCCTTTGGAAGCCCTCCTTTGTTTTTCTAAGTGTTTGCCCTACCCTGTATTTAGCTTCGTCTTCTGCGCTCCTTTAGATCTTCTATCTCCCCCTCCATCGTCATCTCAAGCAAAGGAGACATCCTCAGGGTGGTTCAGGGTGCTTCTTGTTTCTGATTCTGATTCTGATTCATCATCTCCCTGAACTGAATTCACCCCCACCCGATCCC_-_ATGGCTGCTGCTGGCACTGCCACCTCGATCTTATCAAAATCATCCTTAGGAAACAACAAAGGTCTGGTTCGATTGGTTCGTTCAAACTCAGAGATCAACAATATAGGCTTAAGACCTGCTACTTGTTTTAACCCTTTAAAGGGTGACATTTTTGGGGCACAGTTGGCTCCAAAGATGGTGATGACTGAGAGGCAAATCCAGTTTGACAACTCCTCTCTGGTGCGAGTGCGGGCAGAAGCAAAGGTATCAATGTCACTTCGACATCGAGTCAAAGCCAACGCTGCTTCTGCTCAAGGCCCTCCAAGCAGCTCTGTGCAGGAATTACATGTGTATGAGATCAATGAGTTGGACAGAGGGAGCCCTGCTTACCTTCGTCTGAGTCAGAAGCCCGTCAATAATCTGGGAGATCTAGTGCCATTTAGCAACAAGTTGTACAGTGGCAATCTGCAGAAACGTATAGGTATAACAGCTGGGCTCTGTATCCTTATCCAGCATTTTCCTGAGAAGAACGGAGATCGTTATGAAGCAATCTACAGCTTTTACTTCGGAGATTATGGCCATATTTCTGTGCAGGGGCCTTACCTTACATATGAGGAATCATACCTAGCAATTACTGGGGGTTCTGGCATATTCAGTGGAGTTCGTGGGCAAGTAAAGTTAAAACAGATTGTCTTTCCTTTCAAGTTATTCCACACTTTTTACTTAGAGGGCATTCCAAGCCTGCCCGAAACTCTGCTGGGTGAGCCTGTATTTCCAACACCGGATGTGGAGCCATCTCCCGCAGCAAAGAATGTAGAAGCTCATGCCTGCTTGCCCAACTATACCCAGTAA___TTAACTTACTTTACCTGCAATGAATAACAGGCCTGCAACCCTAAATAAATAATATATTCTTAGTAATGTGTTTTTAATTCACTGCTGGTAGTGGTCAGGGTATAATGTCAGCCAAGGTACAAGAAAATAGAGGGCAGGTTCATGTTGCTTGACCTTCACCTTCATCGCTCTTTTCAATATGTACCTTGACTTTGTGAATCCACTATTACTATATATCTTATGTGAAGATGATGTATCAAATGTTAATTAAACATATATATATTTGGAGTATGCTAAATCTGGAGCAGAATGGAGTAATCTACATGTAATAGATAGCGTAATCGTCAATCAGGTCTCTAAGAAGGTGGTTTCTTTGGAAGGAGATATAAAG

Fln Alignment:

Contig7252___MAAAGTATSILSKSSLGNNKGLVRLVRSNSEINN---IGLRPATCFNPLKGDIFGAQLAPKMVMTERQIQFDNSSLVRVRAEAKVSMSLRHRVKANAASAQGPPSSSVQELHVYEINELDRGSPAYLRLSQKPVNNLGDLVPFSNKLYSGNLQKRIGITAGLCILIQHFPEKNGDRYEAIYSFYFGDYGHISVQGPYLTYEESYLAITGGSGIFSGVRGQVKLKQIVFPFKLFHTFYLEGIPSLPETLLGEPVFPTPDVEPSPAAKNVEAHACLPNYT
D5ABJ9_________________MAATGTATSISLKSSLGNNKSLLQLVCSNSEGNNTNSIGFKPATCFKLLKGEIFGAQLA-----TERQIQFDSSSLVRVRAGAEASISIRRRVKANASSVQGPPSGSVQELYVYEMNELDRGSPAYLRLSQKPVNHLGDIVPFSNKLYSGNLQKRLGITAGICILIQHFPEKNGDRYEAIYSFYFGDYGHISVQGPYLTYEESYLTITGGSGIFSGVHGQVKLKQIVFPFKLFYTFYLEGIPSLPEDLLGEPVSPTPDVEPSPSAKNEEPHACLPNYT

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
29	33			66	0.997452
30	33			66	0.997452
32		66	33		0.997452
168	25			75	0.996473
170		75	25		0.996473
172	20		80		0.995493
175			20	80	0.995493
176		80		20	0.995493
209		33	66		0.997452
277		33		66	0.997452
813		90		10	0.90298
832		12	87		0.992554
849	12	12	75		0.975346
852			87	12	0.992554
1216	12			87	0.992554
1218	12			75	0.975346
1221	14			85	0.993533
1224	85			14	0.993533
1286	66	33			0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
156	176	TTCTGA TTCTGA TTCTGA TTC	21

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain