SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7234

Length: 1083 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene7234 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1459	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	zinc ion binding protein	-	-	62%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of translation	GO:0017148	Biological Process	62%
Blast2go	DNA endoreduplication	GO:0042023	Biological Process	62%
Blast2go	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	62%
Blast2go	translation repressor activity	GO:0030371	Molecular Function	62%
Blast2go	cytosol	GO:0005829	Cellular Component	62%
Blast2go	phragmoplast	GO:0009524	Cellular Component	62%
Blast2go	nucleus	GO:0005634	Cellular Component	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	Baculoviral inhibition of apoptosis protein repeat	IPR001370	-	0.0	-
Sma3	Zinc finger, C3HC-like	IPR012935	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
68	25	75			0.996473
71		75	25		0.996473
72	75			25	0.996473
654		33		66	0.997452
655	33	66			0.997452
657		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain