SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7219

Length: 808 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene7219

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4516	9/9

Source	Descriptions	Term	Type	Identity
AutoFact	F-box family protein n=1 Tax=Citrus trifoliata RepID=B8Y9B5_PONTR	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	f-box family protein	-	-	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPY6

Fln msg: Distance to subject end: 97 aas, your sequence is shorter than subject: 269 - 437

Fln protein: RNRDLLASDATGVIEEKIWKELPEDLIERVIARLPIAAFFRFRSVCRRWNSLLNSRSFSQQCAEVPPQCPWFYTITHENVNNGAVYDPSLKKWYHLSLPSLPPKIIILPVTSAGGLVCFLDIGHRNFYVCNPLTRYFQELPSRSVRVWSRVAVGMILNPNGVGYKLLWLGCAGDYEVFDSIENAWTRPGHMPLHIKLPLALNFRSQAITIDEVMYFMRTNPDGLVSYNTMNGTWQQLSIPSPLHSMDHTLAECKGRIMLVGLLTKMLPL

Protein Length: 270

Fln nts: AGGAACCGTGATCTGTTGGCTAGTGATGCTACAGGTGTCATCGAGGAAAAAATCTGGAAAGAGTTACCAGAGGATCTTATTGAAAGAGTCATTGCACGCTTACCTATTGCTGCCTTCTTTCGATTTCGCTCAGTTTGCCGAAGGTGGAATTCTTTACTCAACTCTCGCAGCTTCTCTCAACAATGTGCTGAAGTTCCACCTCAGTGCCCTTGGTTCTACACCATAACACACGAAAATGTCAATAATGGCGCAGTTTATGATCCTTCATTGAAGAAATGGTATCATTTATCATTACCATCCCTTCCTCCCAAAATAATTATATTGCCTGTCACTTCAGCTGGAGGGCTTGTTTGCTTCCTTGATATAGGGCATCGGAATTTCTATGTGTGTAATCCACTTACTCGGTATTTCCAGGAATTGCCGTCGAGATCTGTAAGAGTATGGTCACGGGTGGCTGTGGGAATGATCCTCAACCCTAACGGAGTTGGTTATAAATTGTTGTGGTTAGGATGTGCTGGGGACTATGAAGTGTTTGATTCTATAGAAAATGCTTGGACTAGGCCAGGTCATATGCCCTTGCATATCAAACTTCCTCTTGCCTTGAATTTCAGGTCTCAAGCTATAACCATTGATGAAGTGATGTATTTTATGCGCACGAATCCAGATGGTTTAGTGTCATACAATACGATGAATGGTACTTGGCAACAACTTTCCATTCCCTCACCATTGCACTCAATGGATCATACTCTTGCAGAATGCAAAGGCCGCATTATGTTGGTTGGATTGCTGACAAAAATGCTGCCACTTG

Fln Alignment:

Contig7219___RNRDLLASDATGVIEEKIWKELPEDLIERVIARLPIAAFFRFRSVCRRWNSLLNSRSFSQQCAEVPPQCPWFYTITHENVNNGAVYDPSLKKWYHXXXXXXXXXXXXXXVTSAGGLVCFLDIGHRNFYVCNPLTRYFQELPXXXXXXXXXXAVGMILNPNGVGYKLLWLGCAGDYEVFDSIENAWTRPGHMPLHIKLPLALNFRSQAITIDEVMYFMRTNPDGLVSYNTMNGTWQQLSIPSPLHSMDHTLAECKGRIMLVGLLTK
C0PPY6_________________RNRDLLASDATSVMEEKIWKEFPEDLIERVIARLPIAAFFRFRSVCRRWNSLLNSRSFSQQCAEVPPQCPWFYTITHENVNNGAVYDPSLKKWYHLSLPSLPPKIIILPVTSAGGLVCFLDIGHRNFYVCNPLTQSFQELPSRSVRVWSRVAVGMILNPNGVGYKLLWLGCAGDYEVYDSIENAWTRPGNMPSHIKLPLALNFRSQAITIDGVMYFMRTNPDGLVSYDTMNGTWQQLSIPSPLHSMDHTLAECKGRIMLVGLLTK

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
496	25			25	0.995533
497	75		25		0.996473
723	33	66			0.997452
725		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain