SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7217

Length: 393 nt

UniGene Fasta

>biog3_v1.0_unigene7217
AATGTGTTCTTAGGCATGAAAAGCCAAAAAATTCCAAGTGGATTGCCTCGTGCTGTGGAAAGTGTCATAAAAGGATGCTTTGAATATGATTTCCGAAATCGCCCCTCATTTGCAGATATACACTATGCATTTTCAAAACCCACATGCAATTTTTGGAAGCAGTGGTTGGGTTTGTGCTGGAGACAAGACCGAAGCAAATGATGCTTTGAAATGCAACTGGTTGTTTTTGAAGGATCAGCTTCAAGTTGGGGATTATGTGCGGTCAAGAAAAGTTCCAATTTTGAACAAGCCAGAGAATATGAGTGTTGTGGAGGGAACAGTAGTTGGAATAGATAGTGATATGTATGCACTTGTGAGGGTACATGGTTTGCATGACCCGTTAAGGATAACATT

Ace file of the UniGene biog3_v1.0_unigene7217

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene891	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase family protein [Arabidopsis thaliana] ref\|NP_849560.1\| protein kinase family protein [Arabidopsis thaliana] ref\|NP_001031769.1\| protein kinase family protein [Arabidopsis thaliana] gb\|AAM13866.1\| unknown protein [Arabidopsis thaliana] gb\|AA	-	-	62%
FL-Next	tr=Protein kinase, putative; Ricinus communis (Castor bean).	-	-	64%
Blast2go	protein kinase family protein	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	73%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	73%
Blast2go	ATP binding	GO:0005524	Molecular Function	73%
Blast2go	chloroplast	GO:0009507	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RP30

Fln msg: Separated hits, possible frame ERROR between 120 and 143, Distance to subject end: 228 aas, your sequence is shorter than subject: 131 - 632

Fln protein: NVFLGMKSQKIPSGLPRAVESVIKGCFEYDFRNRPSFADxxxxxxxxxHAIFGSSGWVCAGDKTEANDALKCNWLFLKDQLQVGDYVRSRKVPILNKPENMSVVEGTVVGIDSDMYALVRVHGLHDPLRIT

Protein Length: 132

Fln nts: AATGTGTTCTTAGGCATGAAAAGCCAAAAAATTCCAAGTGGATTGCCTCGTGCTGTGGAAAGTGTCATAAAAGGATGCTTTGAATATGATTTCCGAAATCGCCCCTCATTTGCAGATATxxxxxxxxxxxxxxxxxxxxxxxxACATGCAATTTTTGGAAGCAGTGGTTGGGTTTGTGCTGGAGACAAGACCGAAGCAAATGATGCTTTGAAATGCAACTGGTTGTTTTTGAAGGATCAGCTTCAAGTTGGGGATTATGTGCGGTCAAGAAAAGTTCCAATTTTGAACAAGCCAGAGAATATGAGTGTTGTGGAGGGAACAGTAGTTGGAATAGATAGTGATATGTATGCACTTGTGAGGGTACATGGTTTGCATGACCCGTTAAGGATAACATT

Fln Alignment:

Contig7217___KIPSGLPRAVESVIKGCFEYDFRNRPSFADIxxxxxxxxHAIFGSSGWVCAGDKT---EANDALKCNWLFLKDQLQVGDYVRSRKVPILNKPENMSVVEGTVVGI----DSDMYALVRVHGLHDPLRI
B9RP30_________________RIPEGLPPPVENVLHSCFEYDFRNRPLMKDIxxxxxxxxNAVYGDGGWRELGSRTILDKSGGTGYSKWFLLKDHLQVGDTVRSRKPLNSSKSENMDVPEAIVVGLERDADQDGFLLVRVLGIHDPLRV

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
333		20	80		0.995493
336	80			20	0.995493
352	33			66	0.997452
353		33		66	0.997452
354	33		66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain