SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7213

Length: 1804 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene7213 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27932	30/54
SustainPine v2.0	sp_v2.0_unigene60889	23/54

Source	Descriptions	Term	Type	Identity
AutoFact	EPS15 homology domain 1 protein [Arabidopsis thaliana] ref\|NP_001030731.1\| EPS15 homology domain 1 protein [Arabidopsis thaliana] gb\|AAK59418.1\| unknown protein [Arabidopsis thaliana] gb\|AAO42408.1\| unknown protein [Arabidopsis thaliana] dbj\|BAH19984.1\| A	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	eps15 homology domain 1 protein	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	endocytosis	GO:0006897	Biological Process	88%
Blast2go	endosome	GO:0005768	Cellular Component	88%
Blast2go	microsome	GO:0005792	Cellular Component	88%
Blast2go	membrane	GO:0016020	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	Dynamin, GTPase domain	IPR001401	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EPS15 homology (EH)	IPR000261	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LM82

Fln msg: STOP codon was not found. Distance to subject end: 4 aas, your sequence is longer than subject: 465 - 170

Fln protein: MAMQIISLAQSGNEITADILKNTDLEMISPPAMEGLDEMISKGRRSPMKKGADSNGTSARAQLESAQWFTSKSTKKVSLNSVTSIIDGLKKLYIEKLKPLEVTYRFNDFCSPTLTSSDFDAKPMVMLLGQYSTGKTTFIKHLLRASYPGAHIGPEPTTDRFVVVMSGPDERSVPGNTVAVQADMPFSGLTRFGTAFLSKFECSQMPHPLLEHITFVDTPGVLSGEKQRTQRSYDFTGVTSWFATKCDLILLLFDPHKLDISDEFKRVIGSLRGHDDKIRVVLNKADQIDTQQLMRVYGALMWSLGKVLNTPEVNRVYIGSFNDKPINDAAIGPIGKDLFEREQEDLLSDLKDIPRKACDRRINEFVKRARAAKIHAYIIGHLKKEMPTMMGKAKVQQRLIDKLDEEFGKVQREYHLPAGDFPNVEHFKEVLSGYNFDKFEKIKLKMIQTVDDMLGYDIPDLLRKT

Protein Length: 466

Fln nts: GTATACATCCTGCAACCTTTAATTACCGCCTCTGTCCGCATAAGTATCATGTTCCCAATATACCCTCTAAATTTCCGCTGCTGCTTGCAGAAGCATTGATCTGTAATCTGCTCGCTGTTTGCTTTTATAAGGATCTGGCCATATCCCGAATTAACAAACAAGCAGAACAAGTCCCATCGAAGAGAAATGGACATCTTAGATGTGAGGCTAAACAATCATTCAAAGCACGACGAAAAGCTTTACAGAGAGTGGTTCGAGCAAGCCGATGCAGATGGAGATGGACGCATCACCGGAAACGATGCAGTCAACTTTTTTCCCTATCCCAGCTCCCAAGACAGGAACTTAAACAGGTGTGGGCTGTTGCAGATTCAAAACGCCAAGGTTTTCTTGGATTCAAGGAGTTTGTT_-_ATGGCAATGCAGATAATTTCTCTAGCACAGAGTGGAAATGAGATAACTGCTGACATTCTGAAGAATACAGATTTGGAGATGATCAGTCCTCCAGCAATGGAAGGGTTGGATGAGATGATATCTAAAGGAAGGCGATCGCCCATGAAAAAGGGAGCAGATTCAAATGGTACATCAGCTCGAGCACAGCTGGAGTCAGCTCAGTGGTTTACATCAAAATCTACAAAGAAGGTTTCATTGAACTCAGTGACATCAATAATCGATGGTTTGAAGAAACTATATATAGAGAAGCTAAAGCCGTTGGAAGTTACTTACCGATTCAACGATTTCTGCTCACCCACTCTGACCAGCAGTGACTTTGATGCCAAGCCAATGGTTATGCTTTTAGGCCAGTATTCTACTGGAAAGACAACATTCATCAAACACTTGCTAAGAGCAAGTTATCCAGGGGCTCACATTGGACCAGAGCCAACTACAGATCGCTTTGTTGTTGTGATGTCAGGGCCTGATGAGAGAAGTGTACCTGGTAACACAGTTGCCGTGCAAGCAGATATGCCTTTTAGCGGGTTAACAAGATTTGGAACTGCTTTCCTCTCTAAATTTGAGTGTTCACAAATGCCACATCCTCTTCTGGAGCATATCACCTTTGTTGATACTCCAGGAGTTCTTTCTGGAGAGAAACAGCGTACACAACGCAGCTATGACTTCACTGGCGTGACTTCATGGTTTGCCACAAAGTGTGATCTTATATTATTGTTATTTGACCCTCACAAGCTTGATATTAGTGATGAATTTAAGCGTGTGATTGGCTCTCTTCGTGGCCATGATGATAAGATACGAGTAGTGCTCAACAAAGCAGATCAGATTGATACGCAACAGTTGATGAGAGTATATGGGGCATTGATGTGGTCGCTTGGAAAAGTTCTGAATACACCTGAAGTTAATCGGGTATATATTGGTTCATTCAATGATAAACCAATAAATGATGCAGCGATAGGTCCCATTGGAAAAGATTTATTTGAGAGGGAACAAGAAGATCTGCTGTCTGATTTAAAAGATATCCCTAGAAAGGCCTGTGACCGTCGTATAAATGAATTTGTAAAACGTGCTCGAGCAGCTAAGATTCATGCATACATCATCGGTCATCTGAAGAAAGAGATGCCTACCATGATGGGAAAGGCTAAGGTTCAACAGCGCCTCATTGATAAATTAGATGAGGAATTTGGAAAGGTTCAAAGGGAGTACCATTTACCTGCTGGTGACTTTCCAAACGTTGAACATTTCAAGGAAGTATTGAGTGGTTATAACTTCGATAAATTTGAGAAGATTAAACTAAAAATGATTCAGACAGTAGATGACATGCTAGGATATGACATTCCTGACTTACTGCGCAAGACATT

Fln Alignment:

Contig7213___MWSLGKVLNTPEVNRVYIGSFNDKPINDAAIGPIGKDLFEREQEDLLSDLKDIPRKACDRRINEFVKRARAAKIHAYIIGHLKKEMPTMMGKAKVQQRLIDKLDEEFGKVQREYHLPAGDFPNVEHFKEVLSGYNFDKFEKIKLKMIQTVDDMLGYDIPDLLRK
B8LM82_________________MWSLGKVLNTPEVNRVYIGSFNDKPINDVAIGPIGKDLFEKEQEDLLSDLKDIPRKACDRRINEFVKRARAAKIHAYIISHLKKEMPAMMGKAKAQQRLIDNLDEEFAKVQREYHLPAGDFPSIEHFKEVLSGYNFDKFEKIKLKMIQSVDDMLGYDIPELLRK

SNPs (tot: 52)

Position	A %	C %	G %	T %	Probability
219	33			66	0.997452
223		66		33	0.997452
303	25			75	0.996473
305		75		25	0.996473
306	75		25		0.996473
319		80		20	0.995493
321	80			20	0.995493
388	83		16		0.994512
389	83			16	0.994512
427	16		83		0.994512
428	16		83		0.994512
430			16	83	0.994512
450	85		14		0.993533
453		14		85	0.993533
455		85		14	0.993533
456		85		14	0.993533
582	12		87		0.992554
770		80		20	0.999996
904	14		85		0.993533
906		85		14	0.993533
907	85		14		0.993533
919	85			14	0.993533
920	85			14	0.993533
934	16		83		0.994512
935		16	83		0.994512
936	16	83			0.994512
938		83		16	0.994512
1105	25		75		0.996473
1106		25	75		0.996473
1107	25	75			0.996473
1117	33			66	0.997452
1118		66		33	0.997452
1169	85			14	0.993533
1252	14			85	0.993533
1253		14		85	0.993533
1254	14			85	0.993533
1263		71		28	1.0
1297	10	90			0.90298
1301	10	90			0.90298
1351	30		70		1.0
1354			70	30	1.0
1376	14	85			0.993533
1377		14		85	0.993533
1379			83	16	0.994512
1380	66	16		16	0.988813
1656		20		80	0.995493
1657		20		80	0.995493
1658	80	20			0.995493
1659	80		20		0.995493
1691	75			25	0.996473
1692	75			25	0.996473
1765	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain