SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7197

Length: 379 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene7197
AATGTGACTGTATCCTACATGCTCAGACTGGATCGGGAAAGACGCTTGCTTACTTGCTAGTAATTTTTGCAACAATCGATGCACGTCGAGCAGCTGTGCAGGCACTTATTGTTGTACCAACAAGGGAGTTGGGTATGCAGGTTACAAAAGTGGTTCGTATGCTTGCGGCAAGCTCCTCAAGTGACATGGGACCAAAATACAAAGATTCTCTAAGTGTCATGGCCTTATTAGATGGTGGGAAATTGAAAAGACATAAGAGTTGGCTTAAGGCAGAACCTCCACAAATCATGGTTGCAACATTAGCTTGTTTGTGTCAGATGACTGAGAAGGAATGTGTGAAGCTGGATGCAATTCAGGTTCTAGTCATTGATGAGGTTGA

Ace file of the UniGene biog3_v1.0_unigene7197 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1527	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Putative chloroplast RNA helicase VDL isoform 1 n=3 Tax=Nicotiana tabacum RepID=Q9FE48_TOBAC	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	dead-box atp-dependent rna helicase 58	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	77%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	77%
Blast2go	ATP binding	GO:0005524	Molecular Function	77%
Blast2go	plastid	GO:0009536	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB28

Fln msg: Distance to subject end: 247 aas, your sequence is shorter than subject: 81 - 329

Fln protein: MQVTKVVRMLAASSSSDMGPKYKDSLSVMALLDGGKLKRHKSWLKAEPPQIMVATLACLCQMTEKECVKLDAIQVLVIDEV

Protein Length: 82

Fln nts: AATGTGACTGTATCCTACATGCTCAGACTGGATCGGGAAAGACGCTTGCTTACTTGCTAGTAATTTTTGCAACAATCGATGCACGTCGAGCAGCTGTGCAGGCACTTATTGTTGTACCAACAAGGGAGTTGGGT_-_ATGCAGGTTACAAAAGTGGTTCGTATGCTTGCGGCAAGCTCCTCAAGTGACATGGGACCAAAATACAAAGATTCTCTAAGTGTCATGGCCTTATTAGATGGTGGGAAATTGAAAAGACATAAGAGTTGGCTTAAGGCAGAACCTCCACAAATCATGGTTGCAACATTAGCTTGTTTGTGTCAGATGACTGAGAAGGAATGTGTGAAGCTGGATGCAATTCAGGTTCTAGTCATTGATGAGGTTGA

Fln Alignment:

Contig7197___MQVTKVVRMLAASSSSDMGPKYKDSLSVMALLDGGKLKRHKSWLKAEPPQIMVATLACLCQMTEKECVKLDAIQVLVIDEV
D5AB28_________________MQVTKVVRMLAASYSSDVGLKHKDSVNVMALLDGGKLKRHKSWLKAEPPQIMVATLACLCQMTEKECLKLDAMQVLVIDEV

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
188	20		80		0.995493
282	25		75		0.996473
285		75		25	0.996473
286	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain