SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7148

Length: 1027 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene7148

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4089	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	Major sperm protein [Medicago truncatula]	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	structural molecule activity	GO:0005198	Molecular Function	0.0	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Major sperm protein	IPR000535	-	0.0	-
Sma3	PapD-like	IPR008962	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRI2

Fln msg: Distance to subject end: 31 aas, your sequence is shorter than subject: 231 - 262

Fln protein: MMATADFGGPTTQRSSKGWNLCPMPWLNNGGSSSSVTNGNNSNRGSVDRDPNSNGHPQNTKQRSLGAIAKASFLVRRRLRFDPDRKLYFIYEPGKQVSSAVRIKNVSRSYVAFKFQTNAPKSCFMRPPNGILAPKESILATVMKFVEQPEHPNEKKTKDKFRIVSLKVKEGAEFTSELFDEHKELVAVERVLQVVFLDPQRPCQDLDKLKKRLAEAEALNQARKKPQDDNA

Protein Length: 232

Fln nts: AATGTACGTGCAATCATGGTTGAAGCTTGCTAAATTCCGAAGGAAAGAAGAACGAAAGGGGGAAGCCCATGGGGGTTGCAAAAAGTTGAAGGGATGGCAAAGTCAAAGAGAATATTGTCTCTGGATTGCCATTGCATTCAATGATTTGAGGGAACGAATCAAGGTTGCTAAATTCATACCCGACCAGCTCTCTGCCTTTAACTTGCCTGCACTTTCTCATCTAAAAGGTCTTATTTTGATGCTTAATTGTGTCCTTCAGAGCCATACCCGCCTCTTCAGTATATGACCGAATTCTATAAGCACCGTGAAGGGAAGGGATTCGAACACTGGTTGC_-_ATGATGGCCACCGCTGACTTTGGGGGTCCTACAACGCAGCGGAGTTCCAAGGGCTGGAATCTCTGCCCTATGCCCTGGCTGAACAATGGAGGAAGCAGCAGCAGCGTTACTAATGGTAATAATAGCAACAGGGGGTCAGTTGATCGAGACCCTAACAGCAATGGGCACCCACAAAATACAAAACAGAGATCCTTGGGGGCGATTGCCAAGGCCTCCTTTCTTGTCAGGCGACGCCTGCGGTTCGATCCCGACCGGAAACTCTATTTCATATATGAGCCGGGGAAGCAGGTCTCCAGCGCTGTGAGGATTAAAAACGTGAGCAGATCTTACGTCGCATTCAAGTTCCAGACAAATGCTCCTAAAAGTTGTTTTATGCGGCCTCCTAATGGCATCCTTGCTCCAAAAGAGTCAATTTTAGCAACAGTTATGAAGTTTGTCGAGCAGCCAGAGCATCCTAATGAGAAGAAGACAAAAGACAAATTTAGGATTGTTAGTTTGAAAGTCAAAGAAGGGGCTGAATTCACTTCAGAACTGTTTGACGAGCATAAGGAATTAGTGGCAGTTGAAAGAGTTTTGCAAGTAGTGTTTCTGGATCCTCAACGCCCTTGCCAGGATTTGGATAAGTTGAAGAAACGACTTGCAGAAGCTGAAGCTCTCAACCAAGCACGGAAAAAGCCTCAGGATGACAATGCT

Fln Alignment:

Contig7148___MMATADFGGPTTQRSSKGWNLCPMPWLXXXXXXXXXXXXXXXXXXXVDRDPNSNGHPQNTKQRSLGAIAKASFLVRRRLRFDPDRKLYFIYEPGKQVSSAVRIKNVSRSYVAFKFQTNAPKSCFMRPPNGILAPKESILATVMKFVEQPEHPNEKKTKDKFRIVSLKVKEGAEFTSELFDEHKELVAVERVLQVVFLDPQRPCQDLDKLKKRLAEAEALNQARKKPQDDN
A9NRI2_________________MMATADFGGSTAQRSSKGWNLCPMPWLNNGGSSSNVNSGNNSNRGSVDRNPNSNRHPLNTKQMSLGAIAKASFLVRRRLRFDPDRKLYFIYEPGKQVSSAVRIKNVSRSYVAFKFQTNAPKSCFMRPPNGILAPKESILATVMKFVEQPEHPNEKKTKDKFRIVSLKVKEGAEFTSELFDEHKELVAVERVLQVVFLDPQRPCQDLEKLKKRLAEAEALNQARKKPQDDN

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
464	16	83			0.994512
466			83	16	0.994512
468			83	16	0.994512
500	16		83		0.994512
503		83		16	0.994512
504		80		20	0.995493
921	33		66		0.997452
922		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
428	439	AGC AGC AGC AGC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain