SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7143

Length: 1814 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene7143

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1628	95/96

Source	Descriptions	Term	Type	Identity
AutoFact	Chorismate synthase n=1 Tax=Picea sitchensis RepID=B8LL06_PICSI	-	-	93%
FL-Next	sp=Chorismate synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	chorismate synthase	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Chorismate synthase.	EC:4.2.3.5	-	0.0	86%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	86%
Blast2go	Biosynthesis of phenylpropanoids	01061	86%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	86%
Blast2go	Biosynthesis of plant hormones	01070	86%
Blast2go	Metabolic pathways	01100	86%
Blast2go	Biosynthesis of secondary metabolites	01110	86%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	86%
Blast2go	aromatic amino acid family biosynthetic process	GO:0009073	Biological Process	86%
Blast2go	chorismate synthase activity	GO:0004107	Molecular Function	86%
Blast2go	nucleolus	GO:0005730	Cellular Component	86%
Blast2go	chloroplast	GO:0009507	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Chorismate synthase	IPR000453	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL06

Fln msg:

Fln protein: MSSAILSKAFLQVSLRDGTLEGPGMCAPKADLARLRTVRILPQQTRLRKVEIRAGTGNTFGTLFRVTTFGESHGGGVGCVIDGCPPRIPLSEADMQVELDRRRPGQSRITTPRKETDTCRILSGLSEGQTTGTPIAVLVPNTDQRGNDYSEMSLAYRPSHADATYDFKYGVRSVQGGGRSSARETIGRVAAGAVAKKILELKAGTEVLAYVSQVHKEVLPDGVVDHDTLTLAKIESNIVRCPDPVYAEKMIAAIDDVRTKGDSVGGVVTCIVRNVPRGLGSPVFDKLEAELAKALMSLPATKGFEIGSGFAGTLITGSEHNDEFYMDERGDIRTRTNRSGGIQGGISNGEMIKLRLAFKPTSTITRKQMTVTRNREETELQARGRHDPCVVPRAVPMVEAMVALVLVDHLMQQYAQCELFPMGSLQDSLDQQNAKAVEMLSK*

Protein Length: 444

Fln nts: AAGCAGTAGGTATCAACGCAGAGTACACGGGAGCACAGTCCGAAGGAAAGGTTCCAAGTCAGAAGCCAAA_-_ATGAGCTCTGCAATACTCTCAAAGGCATTCTTGCAGGTTTCTCTCAGAGATGGAACCCTGGAGGGACCTGGGATGTGCGCCCCCAAGGCAGATCTTGCCAGGCTGAGAACGGTTCGGATCCTTCCCCAGCAAACACGCTTGAGAAAAGTTGAGATACGAGCTGGTACCGGAAATACATTTGGTACTTTATTTCGTGTTACAACTTTTGGAGAATCTCATGGTGGAGGTGTAGGATGTGTAATTGATGGATGCCCACCTCGAATTCCTCTGTCTGAAGCTGATATGCAAGTGGAACTTGACAGGAGGAGGCCGGGACAAAGCCGTATCACTACTCCTCGTAAAGAAACTGACACATGCCGCATTCTCTCAGGTCTTTCTGAAGGTCAGACTACTGGAACTCCAATTGCTGTGCTTGTGCCAAATACAGATCAAAGAGGAAATGATTACAGTGAAATGTCATTAGCCTATCGGCCATCTCATGCGGATGCCACATATGACTTCAAATATGGTGTTCGTTCAGTTCAGGGAGGTGGCAGATCTTCAGCACGGGAAACAATTGGAAGAGTAGCAGCTGGGGCTGTGGCAAAGAAGATACTTGAGCTAAAAGCTGGGACTGAGGTTCTAGCATATGTATCGCAGGTTCATAAAGAGGTTCTCCCAGATGGGGTTGTTGATCATGACACATTGACTCTGGCTAAGATAGAAAGCAATATTGTTAGGTGCCCAGATCCTGTATATGCTGAGAAGATGATAGCTGCTATAGACGATGTTCGAACAAAAGGTGATTCAGTTGGTGGGGTTGTTACCTGCATTGTAAGGAATGTACCAAGGGGACTTGGTTCACCAGTATTTGACAAGCTCGAAGCAGAGTTGGCAAAGGCTCTGATGTCCTTGCCTGCAACCAAAGGATTTGAAATTGGCAGTGGGTTTGCAGGAACTCTAATTACCGGCAGTGAGCACAATGATGAGTTTTACATGGATGAGAGGGGAGATATTAGGACCAGAACTAACAGATCAGGTGGTATACAGGGTGGGATATCGAATGGCGAGATGATAAAACTGAGACTTGCTTTTAAACCAACGTCAACCATTACGAGGAAGCAAATGACTGTCACCAGAAACAGAGAGGAGACTGAACTCCAAGCACGTGGTCGACATGATCCATGCGTAGTCCCTAGAGCTGTACCTATGGTTGAAGCTATGGTGGCTTTGGTGTTAGTTGATCACTTGATGCAACAGTATGCCCAATGTGAGTTGTTTCCCATGGGTTCACTTCAAGATTCATTGGATCAGCAGAATGCAAAAGCAGTTGAAATGCTCAGCAAGTAG___TGAGGTTGATAAAGCTGGAAGTTGCAGTTTTGTTTGGAGGTTGATTTTTATGGTATTTTCCAAATAACAGAGATAGCATGAAGGTTGTTGGTATGAAGCAAATTATATGTATCAGTCAGGTTAGGGTGTTGTATCCAGACAAGACCTCATGCCACAAACGAGACATATCAGATTCGTAGTAATCCAGGCATGGAACTAATGCTAAGGAAATCTGATTTCTTTTGTTGGATTTAAGAGCACTGGTATTATAATTGAATATGGCTACTTAATGAAACTGTGCTATGACTCGAGCAGCAAGGCACAAATTTGTATATCAGAAGATTTTAAATAGAGGAGATCATGGGTAATACACTTTTCCAAAGTCTGCTGATGCAATACGAAAATAAAATATAATTGAGGCAGATTTCTGTACATT

Fln Alignment:

Contig7143___MSSAILSKAFLQVSLRDGTLEGPGMCAPKADLARLRTVRILPQQTRLRKVEIRAGTGNTFGTLFRVTTFGESHGGGVGCVIDGCPPRIPLSEADMQVELDRRRPGQSRITTPRKETDTCRILSGLSEGQTTGTPIAVLVPNTDQRGNDYSEMSLAYRPSHADATYDFKYXXXXXXXXXXXXARETIGRVAAGAVAKKILELKAGTEVLAYVSQVHKEVLPDGVVDHDTLTLAKIESNIVRCPDPVYAEKMIAAIDDVRTKGDSVGGVVTCIVRNVPRGLGSPVFDKLEAELAKALMSLPATKGFEIGSGFAGTLITGSEHNDEFYMDERGDIRTRTNRSGGIQGGISNGEMIKLRLAFKPTSTITRKQMTVTRNREETELQARGRHDPCVVPRAVPMVEAMVALVLVDHLMQQYAQCELFPMGSLQDSLDQQNAKAVEMLSK
B8LL06_________________MSSAILSKAFLQVSLKDGTLERPGMCAPKADLARLRTVQILPQQARLRKFEIRAGTGNTFGTLFRVTTFGESHGGGVGCVIDGCPPRIPLSEADMQVELDRRRPGQSRITTPRKETDTCRILSGLSEGQTTGTPIAVLVPNTDQRGNDYSEMSLAYRPSHADATYDFKYGVRSVQGGGRSSARETIGRVAAGAVAKKILELKAGTEVLAYVSQVHKEVLPDGIVNHDTLTQAEVESNIVRCPDPVYAEKMIAAIDDVRTKGDSVGGVVTCIVRNVPRGLGAPVFDKLEAELAKALMSLPATKGFEIGSGFAGTLITGSEHNDEFYMDESGDIRTRTNRSGGIQGGISNGEMIKVRLAFKPTSTITRKQMTVTRNREETELQARGRHDPCVVPRAVPMVEAMVALVLVDHLMQQYAQCELFPLGSLQDSLDQQNAKEVEMLSK

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
31		16	50	16	0.988986
43	83		16		0.994512
56	83	16			0.994512
196		75	25		0.996473
1664	20	80			0.995493
1665		20		80	0.995493
1708		25		75	0.996473
1710			25	75	0.996473
1712			25	75	0.996473
1716			25	75	0.996473
1717		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain