SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7120

Length: 536 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene7120
TGCGTATGGCTTCTGATTGTGAAGATAGGCAAATTTATATCTGCTCTTGTAATATTTAGATCAAGGATACTTTATGCGAATGTTTCTTATGACCATATGGTTGGTTGGCGCACATCCTCTATACGGAGAGAGTCAGAGCTTGTCAAGCCACCAGAGCATTCTCTAGATGGGTATAAACATGTTGTGGATGTAATATATTGTCCGCCAGTTCTAACAGATGGTCCATCATATGGGCCTGAAACTGCAAAGGCAAAGGAAGCAGCACAAACAACACCCAGCAGTAAAAGGGCAGAAGACTACTATGATAAGTTAGAAGACGAGATGATTCGAGGATTACAAAGAGTTGGATGGAAAAAAGTGGACGTTAGCTTTCATTCAGCTCTCTGGCCCTTTTTTGCTCATAACAACATTCATGTGAAACAGGAGTGGTTGCATTATGCAGGGGCTGGAGTCGTGGCTCATGTTGCAGACAGTTTGAAACAGCAAGAAATTGTGACACTCATTCCGGCAAGCCTTTAAAAGCACTGTATGACATT

Ace file of the UniGene biog3_v1.0_unigene7120 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1079	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	Catalytic, putative n=1 Tax=Ricinus communis RepID=B9S9A5_RICCO	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	hydrolase-like protein	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF676, lipase-like	IPR007751	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL85

Fln msg: your sequence is shorter than subject: 173 - 464

Fln protein: CVWLLIVKIGKFISALVIFRSRILYANVSYDHMVGWRTSSIRRESELVKPPEHSLDGYKHVVDVIYCPPVLTDGPSYGPETAKAKEAAQTTPSSKRAEDYYDKLEDEMIRGLQRVGWKKVDVSFHSALWPFFAHNNIHVKQEWLHYAGAGVVAHVADSLKQQEIVTLIPASL*

Protein Length: 174

Fln nts: TGCGTATGGCTTCTGATTGTGAAGATAGGCAAATTTATATCTGCTCTTGTAATATTTAGATCAAGGATACTTTATGCGAATGTTTCTTATGACCATATGGTTGGTTGGCGCACATCCTCTATACGGAGAGAGTCAGAGCTTGTCAAGCCACCAGAGCATTCTCTAGATGGGTATAAACATGTTGTGGATGTAATATATTGTCCGCCAGTTCTAACAGATGGTCCATCATATGGGCCTGAAACTGCAAAGGCAAAGGAAGCAGCACAAACAACACCCAGCAGTAAAAGGGCAGAAGACTACTATGATAAGTTAGAAGACGAGATGATTCGAGGATTACAAAGAGTTGGATGGAAAAAAGTGGACGTTAGCTTTCATTCAGCTCTCTGGCCCTTTTTTGCTCATAACAACATTCATGTGAAACAGGAGTGGTTGCATTATGCAGGGGCTGGAGTCGTGGCTCATGTTGCAGACAGTTTGAAACAGCAAGAAATTGTGACACTCATTCCGGCAAGCCTTTAA___AAGCACTGTATGACATT

Fln Alignment:

Contig7120___GKFISALVIFRSRILYANVSYDHMVGWRTSSIRRESELVKPPEHSLDGYKHVVDVIYCPPVLTDGPSYGPXXXXXXXXXXXTPSSKRAEDYYDKLEDEMIRGLQRVGWKKVDVSFHSALWPFFAHNNIHVKQEWLHYXXXXXXXXXADSLKQQEIVTLIPASL
B8LL85_________________GKFISALAIFRSRILYANVSYDHMVGWRTSSIRRESELVKPPEHSLDGYKHVVDVVYCQPVLTDGPSYPPETAKAKEAAQTTPSSKRAEDYYDKLEEEMIRGLQRVGWKKVDVSFHSALWPFFAHNNIHVKQEWLHYAGAGVVAHVADSLKQQEMVTFISASL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
477	33		66		0.997452
481		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain