SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7098

Length: 1410 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene7098 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16553	48/60
SustainPine v2.0	sp_v2.0_unigene16819	12/60

Source	Descriptions	Term	Type	Identity
AutoFact	Chloroplast sedoheptulose-1,7-bisphosphatase n=1 Tax=Solanum lycopersicum RepID=C5IU71_SOLLC	-	-	80%
FL-Next	sp=Sedoheptulose-1,7-bisphosphatase, chloroplastic; Triticum aestivum (Wheat).	-	-	77%
Blast2go	sedoheptulose- -bisphosphatase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Sedoheptulose-bisphosphatase.	EC:3.1.3.37	-	0.0	87%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Carbon fixation in photosynthetic organisms	00710		0.0	87%
Blast2go	Metabolic pathways	01100		0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	sucrose biosynthetic process	GO:0005986	Biological Process	87%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	87%
Blast2go	starch biosynthetic process	GO:0019252	Biological Process	87%
Blast2go	sedoheptulose-bisphosphatase activity	GO:0050278	Molecular Function	87%
Blast2go	protein binding	GO:0005515	Molecular Function	87%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	87%
Blast2go	thylakoid	GO:0009579	Cellular Component	87%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	87%
Blast2go	apoplast	GO:0048046	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase	IPR000146	-	0.0	-
Sma3		IPR017955	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P46285

Fln msg:

Fln protein: MESSMVAYSCSSTPLSRGSEPQLMSRPSLAASPARIPSITSRSAKASSIYGESLRTWPKSVARRMVSARNPSRNGSTLVTKCELGDSLEEFLAKSTNNKNLSRLLVCMGEAIRTIAFKVRTASCGATSCINTFGDEQLAVDLIANKLLFESLRYSHFCKYACSEENPEPEDMGGPVEGGFSVAFDPLDGSSIVDTNFTVGTIFGVWPGDKLTGVTGRDQVAAAMGIYGPRTTYVLALKDAPGTHEFLLMDDGKWQHVKDTTEIGEGKLFSPGNLRATFDNPEYEKLINYYVSEKYTLRYTGGMVPDVNQIIVKEKGIFTNVTSPTAKAKLRLLFEVAPLGMLVEKAGGYSSDGKQSVLEKVISFVDERTQVAYGSKNEIIRFEETLYGSSRLNVPVGATVKA*

Protein Length: 404

Fln nts: CGGGAATCAATCAATCGATCCATATTTGCTGCAGTAACAACA_-_ATGGAGAGTAGCATGGTGGCATACTCGTGCAGCAGCACACCACTCTCGCGAGGCTCGGAACCTCAGCTTATGTCCAGGCCATCTCTTGCTGCTTCACCTGCTCGAATCCCTTCCATAACCTCCCGGAGTGCCAAAGCAAGTTCTATCTATGGTGAGTCACTGCGCACATGGCCGAAATCTGTTGCAAGAAGAATGGTCTCAGCCAGAAATCCCAGCAGAAATGGTTCCACTCTAGTTACAAAATGTGAGCTAGGGGATTCTCTGGAGGAATTCCTGGCCAAGTCAACAAACAACAAGAATCTATCAAGGCTTTTGGTGTGCATGGGGGAAGCAATTAGAACCATAGCCTTCAAAGTCAGGACAGCGTCTTGTGGTGCCACATCCTGCATAAATACCTTTGGTGACGAGCAGCTGGCTGTTGATCTTATTGCCAATAAGCTGCTCTTTGAGTCTTTGAGATACTCCCATTTTTGTAAATATGCATGCTCCGAAGAGAACCCAGAGCCCGAGGACATGGGTGGACCTGTGGAAGGCGGGTTCAGTGTGGCCTTTGATCCTCTTGATGGGTCAAGCATTGTTGATACCAACTTCACAGTTGGTACAATATTTGGAGTGTGGCCTGGAGACAAATTAACAGGAGTGACTGGCAGAGATCAGGTTGCTGCTGCCATGGGCATTTATGGGCCTCGGACAACATATGTGCTTGCCCTCAAAGATGCACCAGGCACTCATGAATTCTTGTTAATGGATGATGGCAAGTGGCAACATGTTAAGGATACTACCGAGATAGGAGAGGGGAAACTCTTCTCTCCTGGGAATTTGAGGGCAACTTTTGACAACCCTGAATATGAGAAGCTGATCAACTACTATGTGAGTGAGAAGTACACACTCCGATACACAGGAGGCATGGTGCCAGATGTTAACCAGATTATAGTGAAGGAGAAGGGAATTTTCACAAATGTTACATCGCCAACCGCAAAGGCGAAGCTAAGATTGCTTTTCGAGGTGGCCCCTCTGGGAATGCTGGTTGAGAAAGCGGGCGGGTACAGCAGCGATGGAAAACAATCAGTTTTAGAGAAGGTTATTAGCTTCGTGGATGAGAGAACACAGGTTGCATATGGTTCCAAGAATGAAATCATTAGGTTCGAAGAAACCCTCTATGGATCTTCCAGGCTTAATGTGCCAGTTGGAGCAACAGTCAAGGCCTGA___TACGCGCTATATTCTCTCACCATTTTTTTGGGCTCATCTACTCCTCCGGATATCAATAGAAAATCATTCCCACAAGTCTGCCGAACCTTCGTTTTTTCTGGAAGTAACTGTGTATGTGTTTATAATTTTGGTATATATATTCGTCAGACATATAAAAAA

Fln Alignment:

Contig7098___PSLAASPARIPSITSRSAK-ASSIYGESLRTWPKSVARRMVSARNPSRNGS--TLVTKCELGDSLEEFLAKSTNNKNLSRLLVCMGEAIRTIAFKVRTASCGATSCINTFGDEQLAVDLIANKLLFESLRYSHFCKYACSEENPEPEDMGGPVEGGFSVAFDPLDGSSIVDTNFTVGTIFGVWPGDKLTGVTGRDQVAAAMGIYGPRTTYVLALKDAPGTHEFLLMDDGKWQHVKDTTEIGEGKLFSPGNLRATFDNPEYEKLINYYVSEKYTLRYTGGMVPDVNQIIVKEKGIFTNVTSPTAKAKLRLLFEVAPLGMLVEKAGGYSSDGKQSVLEKVISFVDERTQVAYGSKNEIIRFEETLYGSSRL--NVPVGAT
P46285_________________PACCAAMSFSQSYRPKAARPATSFYGESLRA---NTARTSFPAGRQSKAASRAALTTRCAIGDSLEEFLTKATPDKNLIRLLICMGEAMRTIAFKVRTASCGGTACVNSFGDEQLAVDMLADKLLFEALEYSHVCKYACSEEVPELQDMGGPVEGGFSVAFDPLDGSSIVDTNFTVGTIFGVWPGDKLTGVTGGDQVAAAMGIYGPRTTFVVALKDCPGTHEFLLLDEGKWQHVKDTTSIGEGKMFSPGNLRATFDNPDYDKLVNYYVKEKYTLRYTGGMVPDVNQIIVKEKGIFTNVTSPTAKAKLRLLFEVAPLGFLIEKAGGHSSDGKQSVLDKVISVLDERTQVAYGSKNEIIRFEETLYGSSRLAASATVGAT

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
219	33			66	0.997452
220	33	66			0.997452
222			33	66	0.997452
223		66		33	0.997452
288	75		25		0.996473
289	75			25	0.996473
327	25	75			0.996473
328	25	75			0.996473
329		75		25	0.996473
331		75		25	0.996473
398	20			80	0.995493
399	20			80	0.995493
400			80	20	0.995493
402		80		20	0.995493
414	16			83	0.994512
415	16		83		0.994512
418	83			16	0.994512
489	10	90			0.90298
503	90			10	0.90298
980	11			88	0.923564
981		11		88	0.923564
984			88	11	0.923564
994	14		85		0.993533
997		85		14	0.993533
998		85		14	0.993533
1017	16			83	0.994512
1167	16		83		0.994512
1168		16	83		0.994512
1169	16	83			0.994512
1171	14		71	14	0.984337
1173			83	16	0.994512
1174	83		16		0.994512
1175		83		16	0.994512
1246	20	80			0.995493
1247	20		80		0.995493
1248			80	20	0.995493
1250	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain