SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7084

Length: 1281 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene7084

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene94	18/18

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	zinc finger	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	70%
Blast2go	plant-type hypersensitive response	GO:0009626	Biological Process	70%
Blast2go	response to salt stress	GO:0009651	Biological Process	70%
Blast2go	calcium ion homeostasis	GO:0055074	Biological Process	70%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	70%
Blast2go	defense response to bacterium, incompatible interaction	GO:0009816	Biological Process	70%
Blast2go	ATP binding	GO:0005524	Molecular Function	70%
Blast2go	protein binding	GO:0005515	Molecular Function	70%
Blast2go	mitochondrion	GO:0005739	Cellular Component	70%
Blast2go	endosome	GO:0005768	Cellular Component	70%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	70%
Blast2go	chloroplast	GO:0009507	Cellular Component	70%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	4Fe-4S ferredoxin-type, iron-sulpur binding domain	IPR017896	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A973

Fln msg: Distance to subject end: 186 aas,

Fln protein: MEQKIVIYNLWLNDDGVLELDFDKDKEDIRLREIGKIEKPMPSQKALLQSSISYRLRYSLRVYASILYLKKLPNFSIILRGNRVEHHYIADDLKFPKVVIYKPQLGIVSKEVSVATTIGFAPEAPSINIQGFNVYHKNRLIMPFWKIWPSNTDSRGRGVVGVLEANFIEPAHDKQDFERTAILLRLEARLKQMTADYWRLHCGLIGYQAKSSTDGQRNSLPSTVVEKPYSASVVPRCSISQNIVSHNLAASKSLPNHGQIAGPVLADLGDHNQQLRQETSRDHCGKLHVPNLGVT

Protein Length: 296

Fln nts: GGAGGTGGAATGGATCCTGATTGTATGCGGCAATGTATGAGCTTGGGTTACTCAGTGAAAACTAATAGCACAACTATAGGACAATATGGCAATGGATTCAAAACCAGTACCATGAGATTAGGTGCAGATGTGATTGTTTTCAGTCGCTCTGGTCGTGGCAGCCCTCCCACACAGAGTATTGGGCTTCTTTCTTACACATTTTTGAGGAGAACAGGGCAAGATGACACCATTGTGCCAATGGTTGATTTTGTTCTTTCACAAGATTTGAGAAAAGCAACAATGTTAATTCGTAGCACAAAGGATGATTGGTTGAAAAACTTAACCACAATCCTCCAATGGTCTCCTTATAAAACAGAAGATGAACTTATGAATCAGTTTGAAGACATTGGACCTC_-_ATGGAACAAAAAATTGTAATTTACAACCTTTGGCTTAATGACGATGGTGTCCTTGAACTTGACTTTGACAAAGACAAGGAGGATATACGCCTTCGAGAAATAGGCAAAATAGAAAAACCCATGCCATCACAAAAAGCATTGCTTCAATCCAGCATTTCATATCGCCTACGTTATTCATTACGTGTCTATGCTTCTATTCTTTATCTAAAAAAACTACCAAATTTCAGTATTATTTTAAGGGGAAACCGTGTTGAGCATCACTACATTGCTGATGATCTGAAGTTTCCTAAAGTAGTCATCTACAAGCCACAACTTGGGATTGTTTCTAAGGAGGTGTCTGTGGCAACAACTATAGGATTTGCACCAGAAGCACCTTCTATTAATATTCAAGGATTCAACGTGTATCACAAAAATCGCTTGATCATGCCCTTTTGGAAAATCTGGCCAAGTAATACAGATAGCAGAGGAAGGGGTGTTGTAGGTGTTCTTGAAGCAAACTTTATAGAGCCTGCACATGACAAACAGGATTTTGAAAGAACAGCTATACTACTTCGGTTAGAAGCGAGACTTAAACAAATGACTGCTGACTACTGGAGACTGCATTGTGGATTAATAGGTTATCAAGCAAAATCTTCCACTGATGGTCAACGCAATTCTTTGCCTTCTACCGTAGTTGAGAAACCTTATTCAGCAAGTGTTGTTCCAAGATGCTCAATTTCCCAGAATATTGTTTCTCATAATTTGGCTGCTTCAAAATCTCTTCCCAATCATGGGCAAATAGCAGGACCTGTTCTGGCAGACCTTGGTGACCATAATCAACAGCTCCGTCAAGAAACCAGCAGAGATCATTGTGGAAAGTTGCATGTTCCCAACCTAGGGGTGACATT

Fln Alignment:

Contig7084___MTADYWRLHCGLIGYQAKSSTDGQRNSLPSTVVEKPYSASVVPRCSISQNIVSHNLAASKSLPNHGQIAGPVLADLGDHNQQLRQETSRDHCGKLHVPNLGVT
D5A973_________________MTADYWRLHCELIGYQAKSSTDGPHISLPSPLVEKPCSASAVPRCSIYQNFVSHNLPISKSLPSHGQIAGPVMADLGCHNQQLHQETSRDRCGKLNVSNLGET

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
362	16		83		0.994512
363	66	16		16	0.988813
365		83		16	0.994512
399	20		80		0.995493
400	80	20			0.995493
402		80		20	0.995493
403	80			20	0.995493
818	20		80		0.995493
822		80		20	0.995493
853	83		16		0.994512
854		83		16	0.994512
876		14		85	0.993533
877	14		85		0.993533
879	85			14	0.993533
885	16			83	0.994512
977	75			25	0.996473
1103		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain