SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7057

Length: 529 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene7057
AACCTGGTGCAGCTGATGTATTTCTTACATTATTTGCTATTCAGAGGGTCCACTTCCTGAGGAACTGATACCAAAAGTGGAGTGTCCTGTGCTAGTTGTATGGGGAGATAAGGATCCATGGGAGCCTATAGAATTAGGAAGGGCATATGGTAACTTCAAAAATGTGGAAGATTTTGTAGTTCTGCCAAATGTTGGTCACTGTCCACAGGACGAAGCACCTCATCTTGTAAATCCATTGGTGGAGGAATTTGTGGCTCGCCATGCTACGGATTAAAGCCAAGAAGCATGCACATATAAGCTTGCCATCAGGGAATTGATGACTCTTATCTGATGCAGGAAGCATAATGCAGCCGGTTATATCATTATTGTTATGAACCTCATGCAGAATGAGATTGTAACTAAAAGTTTGCGTGGCCAATAATCTCTGAAGAGGGAGTTTTTGAATCATTACCTAACTGGGACATTTCTTAAGTTTCATGCTTAGATGCACTTTCTTCTGCTCTGTGATCTACACTATGTATTTAATTTT

Ace file of the UniGene biog3_v1.0_unigene7057 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4798	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] gb\|AED92756.1\| hydrolase, alpha/beta fold family protein [Arabidopsis thaliana]	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	38%
Blast2go	alpha beta fold family protein	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	83%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	83%
Blast2go	plastid	GO:0009536	Cellular Component	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	-
Sma3	Epoxide hydrolase-like	IPR000639	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0T9

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 91 - 398

Fln protein: TWCS*CISYIICYSEGPLPEELIPKVECPVLVVWGDKDPWEPIELGRAYGNFKNVEDFVVLPNVGHCPQDEAPHLVNPLVEEFVARHATD*

Protein Length: 92

Fln nts: AACCTGGTGCAGCTGATGTATTTCTTACATTATTTGCTATTCAGAGGGTCCACTTCCTGAGGAACTGATACCAAAAGTGGAGTGTCCTGTGCTAGTTGTATGGGGAGATAAGGATCCATGGGAGCCTATAGAATTAGGAAGGGCATATGGTAACTTCAAAAATGTGGAAGATTTTGTAGTTCTGCCAAATGTTGGTCACTGTCCACAGGACGAAGCACCTCATCTTGTAAATCCATTGGTGGAGGAATTTGTGGCTCGCCATGCTACGGATTAA___AGCCAAGAAGCATGCACATATAAGCTTGCCATCAGGGAATTGATGACTCTTATCTGATGCAGGAAGCATAATGCAGCCGGTTATATCATTATTGTTATGAACCTCATGCAGAATGAGATTGTAACTAAAAGTTTGCGTGGCCAATAATCTCTGAAGAGGGAGTTTTTGAATCATTACCTAACTGGGACATTTCTTAAGTTTCATGCTTAGATGCACTTTCTTCTGCTCTGTGATCTACACTATGTATTTAATTTT

Fln Alignment:

Contig7057___GPLPEELIPKVECPVLVVWGDKDPWEPIE--LGRAYGNFKNV---EDFVVLPNVGHCPQDEAPHLVN-PLVEEFVARHAT
A9P0T9_________________GPNPISLIPNISIPILVLWGDEDPFTPLDGPVGKYFSSLPSLLPSVQFFILRGVGHCPHDDRPDLVHEKLLTWLDSLHAT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain