SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7045

Length: 457 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene7045
AATGTCTCATTTGCCGATGATATTGAGGAAAAGTTGGCAGCGCCTGAGCAACTAGAGATTAAAGAACAGAGGCCATGGCAGCATGGCTTTCAACAACTTTTAAACTTTCCTCTGTGTCATCAAATAGATGATTCTGCCTTTATGATACCCCCACAGTTTCCCGATCAGCATGCAACTCAGTATGTGTCGAAAAAAGGCACGGGCAGTGTCGAGAATAACAGCTCCCATGACTTTCAGCAGGCACGAATCTGCCATCACCAGCAGCTTTTTGAACCAGAAAGCTGCATTACACATGTTTCTGAATCGTGTTCTCCAATTAAGACTGAAGCCTGCAAGGACCATTCCAGCTCCGAGATATTAGAAGAGGGTGTTAGCTCTGCGGCCCTGGACCCCAATTCCTGCATAACTACAAATTCCTCGTCAGAAAATGGCACAGGTGACATTTGTAACCTACATT

Ace file of the UniGene biog3_v1.0_unigene7045 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7187	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	transcription factor FAMA [Arabidopsis thaliana] sp\|Q56YJ8.1\|FAMA_ARATH RecName: Full=Transcription factor FAMA; AltName: Full=Basic helix-loop-helix protein 97; Short=AtbHLH97; Short=bHLH 97; AltName: Full=Transcription factor EN 14; AltName: Full=bHLH t	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	transcription factor bhlh96-like	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	71%
Blast2go	nucleus	GO:0005634	Cellular Component	71%
Blast2go	mitochondrion	GO:0005739	Cellular Component	71%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR001092	-	0.0	-
Sma3	Helix-loop-helix DNA-binding	IPR011598	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLL6

Fln msg: Distance to subject end: 249 aas, your sequence is shorter than subject: 152 - 457

Fln protein: NVSFADDIEEKLAAPEQLEIKEQRPWQHGFQQLLNFPLCHQIDDSAFMIPPQFPDQHATQYVSKKGTGSVENNSSHDFQQARICHHQQLFEPESCITHVSESCSPIKTEACKDHSSSEILEEGVSSAALDPNSCITTNSSSENGTGDICNLH

Protein Length: 153

Fln nts: AATGTCTCATTTGCCGATGATATTGAGGAAAAGTTGGCAGCGCCTGAGCAACTAGAGATTAAAGAACAGAGGCCATGGCAGCATGGCTTTCAACAACTTTTAAACTTTCCTCTGTGTCATCAAATAGATGATTCTGCCTTTATGATACCCCCACAGTTTCCCGATCAGCATGCAACTCAGTATGTGTCGAAAAAAGGCACGGGCAGTGTCGAGAATAACAGCTCCCATGACTTTCAGCAGGCACGAATCTGCCATCACCAGCAGCTTTTTGAACCAGAAAGCTGCATTACACATGTTTCTGAATCGTGTTCTCCAATTAAGACTGAAGCCTGCAAGGACCATTCCAGCTCCGAGATATTAGAAGAGGGTGTTAGCTCTGCGGCCCTGGACCCCAATTCCTGCATAACTACAAATTCCTCGTCAGAAAATGGCACAGGTGACATTTGTAACCTACATT

Fln Alignment:

Contig7045___SFADDIEEKLAAPEQ-LEIKEQRPWQHGFQQLLNFPLCHQIDDSAFMIPPQFPDQHATQYVSKKGTGSVENNSSHDFQQARICHHQQLFEPESCITHVSESCSPIKTEACKDHSSSEILEEGVSSAALDPNSCITTNSSSENGTG
B8LLL6_________________SFADDIEEKLAAPEQQLEMKEQRPWQHGFQQLLNFPLCHQIDDSAFMLPPEFSNQHATQYVSKKSTGTVDNNNSHDFQQARIHHHQQLFEPESCITHVSESCSPIKTEACKDHSSSDAIEEGVSSAALDPNSCITTNSSSENGTG

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
40	33	66			0.997452
41			66	33	0.997452
42	66		33		0.997452
43			66	33	0.997452
48			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain