SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7023

Length: 981 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene7023

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6960	1/25
SustainPine v2.0	sp_v2.0_unigene15754	22/25
SustainPine v2.0	sp_v2.0_unigene61131	2/25

Source	Descriptions	Term	Type	Identity
AutoFact	Ethylene-forming enzyme n=1 Tax=Picea glauca RepID=Q40839_PICGL	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	protein srg1-like	-	-	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW44

Fln msg: Overlapping hits, possible frame ERROR between 340 and 331, your sequence is shorter than subject: 259 - 373

Fln protein: FSLPLEEKLKYAPQAGASQGYGKMFVTADDQTLDWGDLLALALMPNSIKNLALWPTVPTHFRDTVESYAIEIERVAQEVLSLFAENLHLEDADYFKNVFGSEPMNMMRMxxxxxCPRPDLVLGLSPHSDGGGITLLLQDDESVGLHVRKNNRWIPVQPIPYGLVVNIGDLVEVMTNGRYKSVEHRAVTNEERARLSIALFYNASIDAEVAPSSKLVDEHHPCLYRKFIHEEYIRYYISRQLKGKHNLADFAKIDRTNS*

Protein Length: 260

Fln nts: CTTCAGCCTTCCACTAGAAGAAAAGCTGAAATATGCTCCACAAGCAGGAGCCTCCCAGGGTTATGGTAAGATGTTTGTGACAGCTGATGATCAAACTTTGGACTGGGGTGACTTGCTGGCTTTGGCACTCATGCCGAACAGCATTAAGAATCTTGCCCTCTGGCCAACCGTTCCCACACATTTCAGGGATACAGTTGAGAGTTATGCAATTGAGATAGAAAGGGTCGCTCAAGAGGTGTTGAGTTTGTTCGCTGAAAACCTGCATCTGGAGGATGCTGATTATTTCAAGAATGTGTTTGGGTCAGAGCCTATGAATATGATGCGAATGxxxxxxxxxxxxxxxTGCCCTAGACCAGATCTTGTTCTTGGATTGAGTCCTCACTCAGATGGAGGGGGAATAACTCTGCTCCTGCAGGATGACGAGTCTGTAGGCTTGCATGTCCGGAAGAACAATCGATGGATTCCTGTGCAGCCCATTCCATACGGACTGGTTGTAAACATTGGGGACTTGGTAGAGGTAATGACAAACGGGAGATACAAAAGCGTAGAGCACCGGGCAGTAACAAACGAAGAGAGAGCCAGACTTTCGATTGCTCTGTTCTATAATGCGAGTATAGATGCAGAGGTGGCTCCCTCATCGAAGTTAGTAGATGAACACCATCCATGCTTGTACAGGAAGTTCATACACGAAGAATACATTCGTTATTACATTTCCAGACAACTCAAAGGAAAACACAACCTGGCCGACTTCGCCAAAATTGATAGAACCAATAGCTAAGTTCGATAATTGTTCCTACGCAAATTGGGCTGTCTGTTGTCCTCAGCAGAGAATCTTTTAATAAAGGTTGAGGAGGTACGTGATAAGAAATTTGTATGGTACAATGTTCTTAGTAAGAGAACAGTAGTTATCATGTGAGGTGAAAGTTGTCTTATCCAATGTTGAGTAGGTATGTGATGTGAAAGACATCTTTTATGGAGATGC

Fln Alignment:

Contig7023___FSLPLEEKLKYAPQAGASQGYGKMFVTADDQTLDWGDLLALALMPNSIKNLALWPTVPTHFRDTVESYAIEIERVAQEVLSLFAENLHLEDADYFKNVFGSEPMNMMRMNxxxPCPRPDLVLGLSPHSDGGGITLLLQDDESVGLHVRKNNRWIPVQPIPYGLVVNIGDLVEVMTNGRYKSVEHRAVTNEERARLSIALFYNASIDAEVAPSSKLVDEHHPCLYRKFIHEEYIRYYISRQLKGKHNLADFAKID
A9NW44_________________FNLPLQEKQKCAPQAGDVQGYGKTFVVAEDQTLDWGDLLALALMPNNLKNLALWPTVPTNFRDTVERYAIEVERVAQEVLSLFAENLHLE-AEYFKDKFGSEPTNLMRMNxxxPCPRPDLVLGLSPHSDGGGITLLLQDDQTEGLHVRKNNQWIPVQPIPYALVVNIGDLVEVMTNGRYKSVEHRAVTSQERARLSVALFYSAGIDAEVAPSSKIVDEDQQLLYRKFIHEEYIRYYLSRQLKGKHPLADFAKLD

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
908			85	14	0.993533
911		16	83		0.994512
949	20			80	0.995493
950		20	80		0.995493
952			80	20	0.995493
965	33		66		0.997452
966		33		66	0.997452
967	33		66		0.997452
968	66			33	0.997452
969	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain