SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene7009

Length: 1149 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene7009

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20061	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	Mitochondrial carrier YMR166C n=4 Tax=Andropogoneae RepID=B6T2V1_MAIZE	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	mitochondrial substrate carrier family protein e	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Adenine nucleotide translocator 1	IPR002113	-	-
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3		IPR001993	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNW0

Fln msg: your sequence is shorter than subject: 278 - 373

Fln protein: MSDGFRGFYRGVTPGITGSLATGATYFGVIESTKKWLEKNPSLEGHWAHFIAGAVGDTLGSFIYVPCEVMKQRMQVQGTKRSWNSMISKDNASSLKSGTNMYEYYTGIFQAGTSIWKREGLRGLYEGYWSTLMRDVPFAGLMVMFYEALKDTVEYGKRRWALGSRWQDQNSFEGLVLGGVAGGVSAYMTTPLDVIKTRLQVQGSTKRYNGWLDAFQKIRSTEGTKGFFRGSTARVIWYVPASACTFMAVEFLREHFNDKVQHDAHEVASISMETTLQ*

Protein Length: 279

Fln nts: AATGTCAGATGGCTTTAGAGGGTTTTATAGAGGAGTTACTCCTGGAATAACTGGATCACTGGCAACTGGGGCAACCTACTTTGGTGTGATAGAGTCTACTAAGAAATGGTTAGAGAAGAATCCTAGCCTTGAAGGTCATTGGGCTCATTTCATTGCTGGAGCTGTTGGAGACACACTTGGATCTTTCATATATGTCCCATGCGAAGTAATGAAGCAGCGTATGCAGGTCCAAGGAACCAAAAGATCTTGGAATTCAATGATATCCAAAGATAATGCATCTTCCTTGAAGTCTGGTACGAACATGTATGAGTACTATACTGGAATTTTTCAAGCAGGAACCTCTATCTGGAAACGTGAAGGTTTGAGAGGTTTATATGAAGGTTACTGGTCTACCTTAATGAGGGACGTTCCGTTTGCAGGCTTGATGGTTATGTTTTATGAAGCCTTGAAGGATACTGTTGAGTATGGGAAAAGGAGATGGGCACTTGGATCAAGGTGGCAAGACCAAAATTCGTTCGAGGGACTTGTATTGGGAGGTGTTGCTGGGGGTGTTAGTGCTTACATGACAACACCACTTGATGTCATCAAAACACGACTTCAAGTACAGGGATCAACTAAAAGGTACAATGGCTGGCTGGATGCTTTTCAAAAAATAAGGAGCACTGAAGGAACAAAAGGTTTTTTCAGGGGAAGTACTGCCAGAGTCATATGGTATGTCCCAGCTTCAGCTTGCACATTTATGGCTGTTGAGTTTCTGCGAGAGCATTTCAATGACAAGGTTCAGCATGATGCTCATGAAGTTGCAAGCATATCTATGGAGACAACTCTCCAATGA___CACAAGTTGTTTTTGAGCTAAATGGCAAGAAATCCTTCCCTTAATTTCATTGCATCTCTGGTTCAGCAAGTTGTTTTTTCAACATGTACCAAGGCAAATAAGTTTATTGGTTGTTGTGACCTGATCTTGGGTGAAAGATTTGGCATTGCAATTTACACTTCGAAATTTCCTTAAGAGTATTTCATAGGCCGTTGGATTTTGTTTGAAGGGATTATATTGACCTGGATGGTTAATGTAGAAACATTTCACCTATCATCTTTGTAATTATTATGAATTTGCCAGGCCAAAGATTAGCCACTTCAAGCCATTTAGAA

Fln Alignment:

Contig7009___MSDGFRGFYRGVTPGITGSLATGATYFGVIESTKKWLEKNPSLEGHWAHFIAGAVGDTLGSFIYVPCEVMKQRMQVQGTKRSWNSMISKDNASSLKSGTNMYEYYTGIFQAGTSIWKREGLRGLYEGYWSTLMRDVPFAGLMVMFYEALKDTVEYGKRRWALGSRWQDQNSFEXXXXXXXXXXXSAYMTTPLDVIKTRLQVQGSTKRYNGWLDAFQKIRSTEGTKGFFRGSTARVIWYVPASACTFMAVEFLREHFNDKVQHDAHEVASISMET
B8LNW0_________________VTDGFRGFYRGVTPGITGSLATGATYFGVIESTKKWLEKNPSLEGHWAHFIAGGVGDTLGSFIYVPCEVMKQRMQVQGTKGSWYSMIAKDNASSLKSGTNMYEYYTGIFQAGTSIWKCEGLRGLYEGYWSTLMRDVPFAGLMVMFYEALKDTVEYGKRRWALGSRWQDQNSFEGLVLGGVSGGVSAYMTTPLDVIKTRLQVQGSIKRYSGWLDAFQKIWSAEGTKGFFRGSTARVIWYVPASACTFMAVEFLREHFNDKMQHDAHEVASLSMET

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
369	20		80		0.995493
370		20		80	0.995493
395	25	75			0.996473
745		87		12	0.992554
821		14	85		0.993533
823		85		14	0.993533
824	85			14	0.993533
1003	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain