SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6974

Length: 392 nt

UniGene Fasta

>biog3_v1.0_unigene6974
GCACAGAACAGGGGAAAATGTTGACGATGGCGGCGGTGTCTATCCCATGCGGACTGGCAGTGAATATCCCCTTGTTGTCGTCGGCTTTCAATTCTTCTTTGCCTCTGGGATGTCGTCGGAGGTTGAAAACACAACGACCAAGAAAGGAACCATGGCTGTAGGAGCAGCTATGGAAGGCGTTGCCGGTGCTCTGCTCTACCGGGTGGCGTCGATGTCGAGAATTTGGGCTACGATCTTTATGAACTGCTTGGCGTGGAGAGCAAGGCAGGACTGGGCCAGATTAGGACGGCTTACCGATGGCTTCAGAAGAAGTGCCATCCCGACGTCGCTGGCCCTGATGGTCACTACATGTCGATTCTTCTCAATCAGGCTTATTCCGTGCTTTCTGATCC

Ace file of the UniGene biog3_v1.0_unigene6974

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene452	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] dbj\|BAB11179.1\| unnamed protein product [Arabidopsis thaliana] gb\|ABO45691.1\| At5g23240 [Arabidopsis thaliana] gb\|AED93140.1\| DNAJ heat shock N-terminal domain-containing protein	-	-	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	dnaj heat shock n-terminal domain-containing protein	-	-	59%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	59%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	59%
Blast2go	iron ion binding	GO:0005506	Molecular Function	59%
Blast2go	heat shock protein binding	GO:0031072	Molecular Function	59%
Blast2go	unfolded protein binding	GO:0051082	Molecular Function	59%

Source	InterPros	Term	Type	Identity
Sma3	4Fe-4S ferredoxin-type, iron-sulpur binding domain	IPR017896	-	-
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3		IPR015609	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVK8

Fln msg: Separated hits, possible frame ERROR between 155 and 193, Distance to subject end: 398 aas, your sequence is shorter than subject: 125 - 523

Fln protein: MLTMAAVSIPCGLAVNIPLLSSAFNSSLPLGCRRRLKTQRPRKEPxxxxxxxxxxxxxxALPGGVDVENLGYDLYELLGVESKAGLGQIRTAYRWLQKKCHPDVAGPDGHYMSILLNQAYSVLSD

Protein Length: 126

Fln nts: GCACAGAACAGGGGAAA_-_ATGTTGACGATGGCGGCGGTGTCTATCCCATGCGGACTGGCAGTGAATATCCCCTTGTTGTCGTCGGCTTTCAATTCTTCTTTGCCTCTGGGATGTCGTCGGAGGTTGAAAACACAACGACCAAGAAAGGAACCATGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGCTCTACCGGGTGGCGTCGATGTCGAGAATTTGGGCTACGATCTTTATGAACTGCTTGGCGTGGAGAGCAAGGCAGGACTGGGCCAGATTAGGACGGCTTACCGATGGCTTCAGAAGAAGTGCCATCCCGACGTCGCTGGCCCTGATGGTCACTACATGTCGATTCTTCTCAATCAGGCTTATTCCGTGCTTTCTGATCC

Fln Alignment:

Contig6974___MLTMAAVSIPCGLAVNIPLLSSAFNSSLPLGCRRRLKTQRPRKEPWxxxxxxxxxxxxxALPGGVDVENLGYDLYELLGVESKAGLGQIRTAYRWLQKKCHPDVAGPDGHYMSILLNQAYSVLSD
A9NVK8_________________MLTMAAATIPYGLAVKIPKSSSAFNYSLPLGRRWSSKSQRQRKQPWxxxxxxxxxxxxxALPGGVDFENLGYDLYDLLGVESKAGQDQIRRAYRWLQKKCHPDIAGPDGHHMSILLNHAYSVLSD

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
155	50		50		1.0
156	50	50			1.0
177			85	14	0.993533
325	40		60		1.0
329		60		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain