SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6961

Length: 948 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene6961 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22099	4/20
SustainPine v2.0	sp_v2.0_unigene31992	16/20

Source	Descriptions	Term	Type	Identity
AutoFact	serine carboxypeptidase-like 26 [Arabidopsis thaliana] sp\|Q9ZQQ0.1\|SCP26_ARATH RecName: Full=Serine carboxypeptidase-like 26; Flags: Precursor gb\|AAD21479.1\| putative serine carboxypeptidase II [Arabidopsis thaliana] gb\|AAM15111.1\| putative serine carboxy	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	serine carboxypeptidase-like protein	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S10, serine carboxypeptidase	IPR001563	-	0.0	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUH4

Fln msg: STOP codon was not found. Distance to subject end: 15 aas, your sequence is shorter than subject: 315 - 450

Fln protein: YTNTSSDISKSGDKRTAEDSHTFLLNWLERFPQYKNREFYIAGESYGGHYVPQLAQVIYRHNMDLENPAINLKGYMVGNGVTDDFHDRVGIFQFMWSHGLISDNTFRMLNVFCDFSSLVHPSSLCEKALEYADVEMGQIDPYSIYTPPCLNSTGTYGKQLKKVKSWRHLFGGYDPCTEKYSKIYFNLPEVQKALHANVTGIPYEWTTCSDAVGENWGDSPRSVLSIYRELIKAGLRIWMFSGDTDAVIPVTSTRNSINALKLRTVTHWHPWYDNGQVGGWTQVYEGLTFVTIRGAGHEVPLHEPEKAFVLFKSFL

Protein Length: 316

Fln nts: CCTACACCAACACTTCTTCAGATATATCCAAGTCTGGAGATAAACGAACTGCTGAAGATTCACACACCTTCTTGCTCAACTGGTTGGAAAGATTCCCTCAATATAAAAATAGGGAGTTTTACATTGCAGGAGAGAGCTATGGAGGGCATTACGTTCCTCAGTTAGCTCAAGTCATTTACAGACACAACATGGACCTTGAAAATCCAGCCATTAATCTGAAGGGATATATGGTGGGCAATGGAGTTACAGATGATTTCCATGATCGTGTAGGAATTTTTCAATTTATGTGGTCTCATGGTCTCATATCCGACAACACTTTCCGAATGCTCAACGTTTTCTGTGATTTTTCGTCTCTTGTGCACCCATCATCTCTATGTGAAAAGGCATTAGAGTATGCCGACGTGGAAATGGGGCAAATCGATCCATACAGCATCTACACCCCTCCTTGCTTGAACAGTACTGGAACATATGGAAAACAATTAAAAAAAGTGAAGTCATGGAGGCATCTGTTTGGGGGATATGACCCTTGCACTGAAAAATATTCCAAAATTTACTTCAATCTACCTGAGGTACAAAAGGCTCTTCACGCCAATGTTACAGGAATTCCTTATGAATGGACGACTTGCAGTGATGCAGTTGGTGAAAACTGGGGAGACTCTCCTAGATCTGTGCTATCAATTTACCGAGAGCTTATAAAAGCTGGACTACGCATTTGGATGTTCAGTGGAGATACAGATGCAGTGATTCCTGTAACATCTACCAGAAATTCTATAAATGCGCTTAAGCTTCGCACGGTTACTCACTGGCATCCTTGGTATGACAATGGGCAGGTGGGAGGATGGACTCAAGTATACGAAGGGCTGACATTTGTAACAATTAGAGGAGCAGGCCATGAGGTTCCATTGCATGAACCTGAAAAGGCCTTCGTACTCTTCAAGTCATTCTTAG

Fln Alignment:

Contig6961___YTNTSSDISKSGDKRTAEDSHTFLLNWLERFPQYKNREFYIAGESYGGHYVPQLAQVIYRHNMDLENPAINLKGYMVGNGVTDDFHDRVGIFQFMWSHGLISDNTFRMLNVFCDFSSLVHPSSLCEKALEYADVEMGQIDPYSIYTPPCLNSTGTYGKQLKKVKSWRHLFGGYDPCTEKYSKIYFNLPEVQKALHANVTGIPYEWTTCSDAVGENWGDSPRSVLSIYRELIKAGLRIWMFSGDTDAVIPVTSTRNSINALKLRTVTHWHPWYDNGQVGGWTQVYEGLTFVTIRGAGHEVPLHEPEKAFVLFKSFL
A9NUH4_________________YTNTSSDISQSGDRRT-------------------------------GHYVPQLAQVIYKRSKGLANPVINLKGYMVGNGVTDDFHDIVGIFEYMWSHGLISDNTYRLLNVLCDFSSLLHPSALCNMALDKADVEMGEIDPYSIYTPPCLNSTGTYRKQHRKRYPWRHLFGEYDPCTEKHSEIYFNLPEVQKALHANVTGIPYRWTTCSDAVADHWGDSPRSMLPIYQELIKAGLRIWMFSGDTDAVIPVTSTRYSINALKLPTVTQWHPWYDNGQVGGWTQVYEGLTFVTVRGAGHEVPLHEPRKAFTVFESFL

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
199	25		75		0.996473
347			75	25	0.996473
349	75			25	0.996473
450	33		66		0.997452
452	33	66			0.997452
454		66		33	0.997452
675	20			80	0.995493
676		20	80		0.995493
678	80			20	0.995493
679	80			20	0.995493
712		80	20		0.995493
750	25		75		0.996473
751		25	75		0.996473
947	33		66		0.997452
948		33	66		0.997452
949	33			66	0.997452
950			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain