SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6933

Length: 1157 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene6933 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16645	19/19

Source	Descriptions	Term	Type	Identity
AutoFact	peroxin 22 [Arabidopsis thaliana] sp\|Q9LSX7.1\|PEX22_ARATH RecName: Full=Peroxisome biogenesis protein 22; AltName: Full=Peroxin-22; Short=AtPEX22 dbj\|BAB02849.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL36317.1\| unknown protein [Arabidopsis th	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	peroxisome biogenesis protein 22-like	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	peroxisome organization	GO:0007031	Biological Process	0.0	75%
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNC9

Fln msg:

Fln protein: MGDSLREALVEIIRRFGTHVSAKMSNIIALLINHKNAGSIGALAGFALAIVFTWKYLKSPGGQQRRLEKRRNSPTANSDDNSQSTGDTVLSSTVFQPSSSLNETAVSPQEFSTMQLSLAQVVKQQLNGGRKITCQLLGVVLEESTPEELLEHAVVRPAVVDVLLEIAKGCDLYLIARVLDDDSEEKVISALDAVGVFTVGGMNRNKVLFCSTETGRSSFVRQLEPDWHIDTSAEIISQLARFIRYQLHISPVGSGYIASNVLGSDSLERYFGGIS*

Protein Length: 277

Fln nts: ATTGAGATCGAGGGTGGGATCTACCTTTTGGGGTG_-_ATGGGTGATTCCCTGAGGGAGGCTCTCGTCGAGATAATACGCAGATTTGGCACCCATGTGAGTGCCAAGATGTCGAATATCATCGCCCTCTTGATTAATCACAAGAATGCTGGCTCAATTGGAGCCCTTGCAGGATTTGCTCTTGCAATAGTTTTTACATGGAAGTACCTGAAATCTCCTGGAGGACAGCAAAGAAGACTAGAAAAACGAAGAAATTCACCAACAGCAAACTCTGATGACAACTCCCAATCAACTGGAGATACAGTCTTGTCTTCTACTGTGTTCCAGCCTAGTTCAAGTTTGAACGAAACAGCAGTTTCACCCCAGGAATTTAGTACGATGCAGTTAAGTTTGGCACAAGTTGTGAAGCAGCAACTGAATGGTGGTCGAAAGATTACATGCCAGTTGCTTGGCGTGGTACTTGAGGAGTCTACTCCAGAAGAGCTGCTGGAGCATGCTGTTGTGAGGCCCGCGGTTGTGGATGTTCTGTTGGAGATTGCAAAAGGCTGTGATCTCTATCTAATTGCAAGGGTTCTTGATGATGATAGTGAGGAAAAGGTTATTTCAGCGTTGGATGCTGTTGGAGTATTTACAGTTGGTGGCATGAATAGAAACAAGGTTCTCTTTTGCAGTACAGAGACTGGGAGATCATCCTTTGTGCGGCAGCTGGAACCAGATTGGCATATCGACACTAGTGCTGAGATAATTTCTCAGTTAGCTAGATTTATTCGCTATCAACTTCATATTTCGCCTGTTGGGTCAGGATACATTGCTTCTAATGTGTTGGGTTCTGATAGTTTAGAGCGCTACTTCGGAGGCATCAGCTGA___GGAAGTTTTATGTAAACATATATAATGTAAATTGAAAGTAGTCCATTGAATTATGATGACCAGCTTCATGTTGGTAGCTTGTGCATTAGTGCATTTGTATTCTCTAGTGTTGCTGTTTTGGAAATTAGTCTAAGAATTCATTGTTTTTAACGTCTCGTCTTTGACCTGGGGTTAAAAGTATCGAGGGATTTTTCTTCTATTAATAATGCATCTTGTAAGCATGTATTTGTGAATGCACTTCTAACTGAATCAACCGTCTTGAATCAATGGTAAATCTAAGTGTAAAGCAACATT

Fln Alignment:

Contig6933___MGDSLREALVEIIRRFGTHVSAKMSNIIALLINHKNAGSIGALAGFALAIVFTWKYLKSPGGQQRRLEKRRNSPTANSDDNSQSTGDTVLSSTVFQPSSSLNETAVSPQEFSTMQLSLAQVVKQQLNGGRKITCQLLGVVLEESTPEELLEHAVVRPAVVDVLLEIAKGCDLYLIARVLDDDSEEKVISALDAVGVFTVGGMNRNKVLFCSTETGRSSFVRQLEPDWHIDTSAEIISQLARFIRYQLHISPVGSGYIASNVLGSDSLERYFGGI
A9NNC9_________________MGDSLREALLELIRRFGTHVNAKMSNLIALLINHKNAGSIGALAGFALAIVFTWKYLKSPGGHHRRLEKRRNSPTANSDDNSQSTGETVLSSNVCQPSSSLNQTAVSPQEFTTMQLSLAQVVRQQLNGGRKITCQLLGVVLEESTPEELLEHAVVRPTVVDVLLEIAKGCDLYLIARVLDDDSEEKVISALDAVGVFTIGGMNRNKVLFCSTETGRSSFVRQLEPDWHIDTSAEIISQLARFIRYQLHISPVGSGYIASNVFGSDSLERYFGGI

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
158	75		25		0.996473
341		75	25		0.996473
342	75			25	0.996473
500	75			25	0.996473
556		80		20	0.995493
558		80		20	0.995493
573	16	83			0.994512
574	16	83			0.994512
576		83	16		0.994512
577	83			16	0.994512
883	33		66		0.997452
921	16			83	0.994512
922	16			83	0.994512
924		83	16		0.994512
976	20			80	0.995493
1079	33		66		0.997452
1080	66	33			0.997452
1083		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain