SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6924

Length: 384 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene6924
AATGTAGGAGAGGAAAATATTTTGTCACCATTAATCGGAGATTATCTACTGGTTTATTGTCATAGAGACATAAGCGACTTCTTTGGTACCTTATTTTCTTGGCCCACATAAGGAGACATTTTTCTGTCATAAATTGGGGAATATGGAGAAAAATCCAGAGAATCTTCGACAAAACTCTAGCTCAAGTTCCATGAGCAGTCAACATGATGTTGGAGATGACAGGATGATAGCCGAAGTGCTATCTGAAGAATACGCAAATTCAAATGCTGCTGTTGGTAGGCGCCTACAACATCTAAATTCAATGCCGCTTGTTCCTCGGATCAATGGAGCTATACCTAGTGCAGATGATGCAAGTTTCGATCACCAACGACTGCTACATAGATT

Ace file of the UniGene biog3_v1.0_unigene6924 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2484	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	cysteine proteinase-like protein [Arabidopsis thaliana] gb\|AAF14829.1\|AC011664_11 unknown protein [Arabidopsis thaliana] gb\|AAS76700.1\| At3g02070 [Arabidopsis thaliana] gb\|AAS92324.1\| At3g02070 [Arabidopsis thaliana] dbj\|BAH20151.1\| AT3G02070 [Arabidopsis	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	56%
Blast2go	otu domain-containing protein ddb_g0284757-like	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	cysteine-type peptidase activity	GO:0008234	Molecular Function	0.0	82%

Source	InterPros	Term	Type	Identity
Sma3		IPR000097	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Ovarian tumour, otubain	IPR003323	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8J8

Fln msg: Distance to subject end: 144 aas, your sequence is shorter than subject: 80 - 225

Fln protein: MEKNPENLRQNSSSSSMSSQHDVGDDRMIAEVLSEEYANSNAAVGRRLQHLNSMPLVPRINGAIPSADDASFDHQRLLHR

Protein Length: 81

Fln nts: AATGTAGGAGAGGAAAATATTTTGTCACCATTAATCGGAGATTATCTACTGGTTTATTGTCATAGAGACATAAGCGACTTCTTTGGTACCTTATTTTCTTGGCCCACATAAGGAGACATTTTTCTGTCATAAATTGGGGAAT_-_ATGGAGAAAAATCCAGAGAATCTTCGACAAAACTCTAGCTCAAGTTCCATGAGCAGTCAACATGATGTTGGAGATGACAGGATGATAGCCGAAGTGCTATCTGAAGAATACGCAAATTCAAATGCTGCTGTTGGTAGGCGCCTACAACATCTAAATTCAATGCCGCTTGTTCCTCGGATCAATGGAGCTATACCTAGTGCAGATGATGCAAGTTTCGATCACCAACGACTGCTACATAGATT

Fln Alignment:

Contig6924___MEKNPENLRQNXXXXXXXSQHDVGDDRMIAEVLSEEYANSNAAVGRRLQHLNSMPLVPRINGAIPSADDASFDHQRLLHR
D5A8J8_________________MKKEQDNIGESSSSRVLDSQQDIEDDRMIATILSEEYASLDRSVGRRLSHLQSIPHTPRINVYIPSANEATLDHQRLHDR

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
272	25		75		0.996473
273		25		75	0.996473
274	25	75			0.996473
276		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain