SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6907

Length: 512 nt

UniGene Fasta

>biog3_v1.0_unigene6907
AATGTCCAAAAGATATTTTGTTGGGGGTATTTGAATATCTTCCTCACGGTAGATTGCTTAAATATGATCCGAGTACAAAGACTGCTACCGTCCTGCTCACAGACCTCTACTTTCCCAATGCGGTAGCGCTATCCAAGAAAGAGGATTTCTTTATATATTGTGAAACTCTCATCTTCCGCTGTCGAAAGTATTGGTTGGAAGGAGAAAAAGCAGGCAAAGTTGAAACATTCATCGAAAATCTACCGGGATTTCCTGATAATGTGATACTCGACGATGATGGCACATATTGGATTGGTCTTATTGGGGAACGAAATATGTATTGGGATCTTGCGGCCAAATATGCTTCTTTGAGACATTTGTTATTAAGGATATCCAGTTTCATAAACTTGGTTCCATTTCTCTTTCCCACATCAGGCGTAGTAGGCGTGAGAGAAGATGGAGAAGCCATGGCTTACTATTCTGATCCAAAAAGATCATTTATTACCAGTTGGGCTGAAGTATGGGCGGCCGTC

Ace file of the UniGene biog3_v1.0_unigene6907

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3450	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	mucin-like protein [Oryza sativa Japonica Group] gb\|AAP54868.1\| Strictosidine synthase family protein, expressed [Oryza sativa Japonica Group] gb\|EAZ16859.1\| hypothetical protein OsJ_32333 [Oryza sativa Japonica Group]	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	adipocyte plasma membrane-associated	-	-	65%

Source	ECs	Term	Type	e value	Identity
Blast2go	Strictosidine synthase.	EC:4.3.3.2	-	0.0	65%

Source	KEGGs	Term	Identity
Blast2go	Indole alkaloid biosynthesis	00901	65%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	65%
Blast2go	Metabolic pathways	01100	65%
Blast2go	Biosynthesis of secondary metabolites	01110	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	biosynthetic process	GO:0009058	Biological Process	0.0	65%
Blast2go	strictosidine synthase activity	GO:0016844	Molecular Function	0.0	65%

Source	InterPros	Term	Type	Identity
Sma3	Six-bladed beta-propeller, TolB-like	IPR011042	-	-
Sma3	Strictosidine synthase, conserved region	IPR018119	-	-
Sma3		IPR004141	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWM5

Fln msg: Distance to subject end: 20 aas, your sequence is shorter than subject: 170 - 367

Fln protein: CPKDILLGVFEYLPHGRLLKYDPSTKTATVLLTDLYFPNAVALSKKEDFFIYCETLIFRCRKYWLEGEKAGKVETFIENLPGFPDNVILDDDGTYWIGLIGERNMYWDLAAKYASLRHLLLRISSFINLVPFLFPTSGVVGVREDGEAMAYYSDPKRSFITSWAEVWAAV

Protein Length: 171

Fln nts: AATGTCCAAAAGATATTTTGTTGGGGGTATTTGAATATCTTCCTCACGGTAGATTGCTTAAATATGATCCGAGTACAAAGACTGCTACCGTCCTGCTCACAGACCTCTACTTTCCCAATGCGGTAGCGCTATCCAAGAAAGAGGATTTCTTTATATATTGTGAAACTCTCATCTTCCGCTGTCGAAAGTATTGGTTGGAAGGAGAAAAAGCAGGCAAAGTTGAAACATTCATCGAAAATCTACCGGGATTTCCTGATAATGTGATACTCGACGATGATGGCACATATTGGATTGGTCTTATTGGGGAACGAAATATGTATTGGGATCTTGCGGCCAAATATGCTTCTTTGAGACATTTGTTATTAAGGATATCCAGTTTCATAAACTTGGTTCCATTTCTCTTTCCCACATCAGGCGTAGTAGGCGTGAGAGAAGATGGAGAAGCCATGGCTTACTATTCTGATCCAAAAAGATCATTTATTACCAGTTGGGCTGAAGTATGGGCGGCCGTC

Fln Alignment:

Contig6907___PKDILLGVFEYLPHGRLLKYDPSTKTATVLLTDLYFPNAVALSKKEDFFIYCETLIFRCRKYWLEGEKAGKVETFIENLPGFPDNVILDDDGTYWIGLIGERNMYWDLAAKYASLRHLLLRISSFINLVPFLFPTSGVVGVREDGEAMAYYSDPKRSFITS
A9NWM5_________________PKDILLGVFEYLPHGRLLRYDPSTKSATVLLTDLYFPNAVALSKKEDFFIYCETLIFRCRKYWLEGEKAGKVETFIENLPGFPDNVILDDDGTYWIGLIGERNIFWDLAAKYTSLRHLLLRISSFINLDPFLFPTAGVVGVREDGEAIAYYSDPKRSFITS

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
28	20			80	0.995493
31			20	80	0.995493
104		83		16	0.994512
113		16		83	0.994512
156		16		83	0.994512
171	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain