SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6896

Length: 935 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6896

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3275	21/23
SustainPine v2.0	sp_v2.0_unigene62669	2/23

Source	Descriptions	Term	Type	Identity
AutoFact	mate efflux domain-containing protein [Arabidopsis thaliana] dbj\|BAB10542.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAK76728.1\| unknown protein [Arabidopsis thaliana] gb\|AAL85047.1\| unknown protein [Arabidopsis thaliana] gb\|AED96215.1\| mate eff	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	mate efflux family protein dtx1-like	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	response to nematode	GO:0009624	Biological Process	77%
Blast2go	drug transmembrane transport	GO:0006855	Biological Process	77%
Blast2go	drug transmembrane transporter activity	GO:0015238	Molecular Function	77%
Blast2go	antiporter activity	GO:0015297	Molecular Function	77%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Ribulose bisphosphate carboxylase, large subunit, C-terminal	IPR000685	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3		IPR015521	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Proteasome assembly chaperone 3	IPR018788	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADQ8

Fln msg: your sequence is shorter than subject: 290 - 517

Fln protein: MLVFKVGLGNKGAALANSISNWLNVALLSIYVKFSPECKKTWTYFSREALYDITGFLKLAIPSAVMLCLEYWSFELLVLFSGLLPKPELEMSILSICLSTGALAYMIPFGLGAAISTRVSNELGAGRSRTAQLSVCVGVCMAVIEALMIGSIFFSIRNVWGYVYSNEVEVVEYISSMMPLLAPSTFMDAIQGVLSGIARGCGWQKLGAYANLGAYYVVGMPIAVILAFVLHVGGRGLWLGLICGLFAQTVLLSIITFCTNWEEQAKKARERVYTSALPTVTSNIIKDEQ*

Protein Length: 291

Fln nts: AATGTTGGTGTTCAAAGTTGGATTAGGTAATAAAGGGGCTGCGCTTGCAAACAGCATTTCCAACTGGCTAAATGTGGCACTTCTATCAATTTATGTTAAATTTTCCCCTGAATGCAAGAAGACATGGACATACTTCTCAAGGGAAGCTTTATATGACATTACAGGCTTTCTTAAGCTTGCTATTCCATCTGCAGTAATGCTTTGCTTGGAATACTGGTCTTTTGAACTGCTTGTTCTCTTCTCCGGTTTGTTGCCTAAGCCTGAACTTGAGATGTCAATTCTCTCCATCTGTCTTAGCACTGGTGCACTTGCATATATGATCCCCTTTGGCCTGGGTGCTGCTATAAGTACACGAGTTTCCAATGAACTAGGAGCTGGACGCTCACGCACTGCACAGTTATCGGTGTGTGTCGGGGTTTGTATGGCAGTCATTGAGGCTCTCATGATAGGATCTATTTTTTTCTCTATCAGAAATGTATGGGGTTATGTTTATAGCAATGAAGTAGAGGTAGTTGAATACATTTCAAGCATGATGCCGCTGCTTGCACCCTCAACATTTATGGATGCCATCCAAGGTGTTCTATCAGGTATTGCTAGAGGATGTGGATGGCAAAAGTTGGGTGCCTATGCAAATCTTGGGGCATACTATGTGGTTGGCATGCCTATAGCTGTCATTTTGGCCTTTGTACTGCATGTTGGCGGCAGGGGACTTTGGCTTGGACTTATTTGTGGTCTATTTGCACAAACGGTTTTACTGTCGATAATAACGTTTTGTACGAATTGGGAAGAGCAGGCAAAAAAGGCAAGAGAAAGAGTTTACACATCAGCATTGCCGACGGTTACAAGTAATATAATAAAGGATGAGCAGTAA___GTTTTCGGCCTGAATGGTTGGAGTCAATTTTCAAACTCCCCTGCCACTACAAGAGAATGGTTGG

Fln Alignment:

Contig6896___MLVFKVGLGNKGAALANSISNWLNVALLSIYVKFSPECKKTWTYFSREALYDITGFLKLAIPSAVMLCLEYWSFELLVLFSGLLPKPELEMSILSICLSTGALAYMIPFGLGAAISTRVSNELGAGRSRTAQLSVCVGVCMAVIEALMIGSIFFSIRNVWGXXXXXXXXXXXXXXXMMPLLAPSTFMDAIQGVLSGIARGCGWQKLGAYANLGAYYVVGMPIAVILAFVLHVGGRGLWLGLICGLFAQTVLLSIITFCTNWEEQAKKARERVYT
D5ADQ8_________________LAVYKLGFGIFGAALVLSLSWWIVVIAQFIYILKSPRCKYTWTGFSLQAFHGLPSFLKLSAASAVMLCLETWYFQILVLLAGLLDNPEIALDSLSICMSVLGWLFMISVGFNAAASVRVSNELGAGNPRAASFSVKIVTLMSFIISVIFGIVIILLRNVMSYAFTEGTEVADAVAELSPFLAFSIILNGVQPVLSGVAVGCGWQALVAYINVGCYYVIGIPLGCLLGFKFDFGVKGIWSGMLGGTCLQTIILLIITYRTNWNKEVEKASHRLST

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
394		75		25	0.996473
502	80	20			0.995493
504			80	20	0.995493
564		11	88		0.923564
605		18		81	0.999994
615	80		20		0.999996
659	18	81			0.999994
662			81	18	0.999994
666	81		18		0.999994
692	18		81		0.999994
716	10		90		0.90298
717		90	10		0.90298
718		10		90	0.90298
719	10			90	0.90298
723		88	11		0.923564
724		11		88	0.923564
734			11	88	0.923564
737	88			11	0.923564
743	88		11		0.923564
745	88			11	0.923564
749	12		87		0.992554
750	12		87		0.992554
756		87		12	0.992554
761			75	12	0.975346
763		12		87	0.992554
765	87			12	0.992554
770	14		85		0.993533
771		14		85	0.993533
772	14			85	0.993533
779	16		83		0.994512
809	83			16	0.994512
811	83	16			0.994512
812	83			16	0.994512
821		83		16	0.994512
822	83		16		0.994512
826		66		16	0.988813
828			60	20	0.99255
829		80		20	0.995493
870	33		66		0.997452
872	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain