SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6895

Length: 1063 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6895

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene755	23/23

Source	Descriptions	Term	Type	Identity
AutoFact	Forever young oxidoreductase n=2 Tax=Solanum RepID=Q8W2K0_SOLLC	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	forever young oxidoreductase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protochlorophyllide reductase.	EC:1.3.1.33	-	0.0	83%

Source	KEGGs	Term	Identity
Blast2go	Porphyrin and chlorophyll metabolism	00860	83%
Blast2go	Metabolic pathways	01100	83%
Blast2go	Biosynthesis of secondary metabolites	01110	83%

Source	GOs	Term	Type	Identity
Blast2go	meristem maintenance	GO:0010073	Biological Process	83%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	83%
Blast2go	protochlorophyllide reductase activity	GO:0016630	Molecular Function	83%
Blast2go	binding	GO:0005488	Molecular Function	83%

Source	InterPros	Term	Type	Identity
Sma3	SET domain	IPR001214	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADW2

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 197 - 370

Fln protein: D**CRNFLE**MSTQICIIRFVDSNDLNVTSGKRKYNSVTGYSGSKLAQIMFSSVLQRKLPSEAGLNVMCVSPGVVMTNVARDLPRFLQTGYHLIPYFLFNAQEGARSTLFAATDPDIPEYCSVLKADDWPVCPYFSGDCRPTNASAEAHNVGTAMKVWDKTLELIGLPSNTVERLIEGEVVPCKYCHQNTTEVDY*

Protein Length: 198

Fln nts: TGATTAATAATGCAGGAATTTTCTCGAGTAGTGAATGTCAACTCAAATATGCATCATTAGGTTTGTTGACTCCAATGACCTGAATGTTACTTCTGGAAAGAGAAAATATAACAGTGTCACTGGTTACTCAGGAAGCAAACTTGCACAGATTATGTTCAGCAGTGTGCTTCAGAGAAAACTACCTTCTGAAGCTGGTCTAAATGTGATGTGTGTTTCTCCAGGAGTGGTTATGACAAATGTAGCACGAGACTTACCTCGATTTTTGCAGACCGGTTATCACCTAATTCCATATTTCCTTTTTAATGCTCAAGAAGGTGCTAGAAGTACATTATTTGCTGCAACGGATCCTGACATTCCAGAGTATTGCAGTGTCCTAAAGGCTGATGATTGGCCAGTTTGTCCATATTTTTCTGGTGACTGTCGTCCAACAAATGCTTCAGCAGAAGCACACAATGTAGGGACTGCTATGAAGGTTTGGGATAAGACATTGGAACTCATTGGCCTTCCTTCAAACACTGTTGAAAGGCTTATTGAAGGTGAAGTGGTTCCATGTAAATATTGTCATCAGAATACGACAGAAGTGGACTACTGA___CTGGCCAGAGATTCAGATGTGTTCCAAATTCAGTTCTTTTTGTATTCCAAGTATCAAAACCTTCTGCAACCGATTTTCTCATGCCTCAAAATGGTCATGAAAGGCAACATGCACCTTTTGTTTATTCTTATGGCAATTTGCATTCTCAGATCTGTGCTTTTGTTATGAGATTTCCAAATCACAAGGGCATTCTATCATATATTCCCTAAGGCAAGTCCTTGGTATCATTTATTATGCGGTAACCTTTGAAGAACTGAGTTGAACTTGTGTTGACTGTAAGCGAGAAAAGATGACAATTTTGTGGCCATGGAAATGTTTTTCTAGGGATAAATTAAGCTGCAAGCAGAAGATAACATAGTTAGGATCTTGGTTATTGGGATATCTAAATTGGAAATCACCACACTCAGCTAGATATAGTCTAAAATCTGCTTTTAGGCAACCTTTGCTGAGAGTGTAAATCTCATTTACATT

Fln Alignment:

Contig6895___FVDSNDLNVTSGKRKYNSVTGYSGSKLAQIMFSSVLQRKLPSEAGLNVMCVSPGVVMTNVARDLPRFLQTGYHLIPYFLFNAQEGARSTLFAATDPDIPEYCSVLKADDWPVCPYFSGDCRPTNASAEAHNVGTAMKVWDKTLELIGLPSNTVERLIEGEVVPCKYCHQNTTEVDY
D5ADW2_________________FVDSNDLNVTSGKRKYSSVIGYSGSKLAQIMFSSVLQKKLPSEAGLNVMCVSPGVVMTNVARDLPRIIQTGYHLIPYFLFSAQEGARSTLFAATDPDIPEYCSVLRADDWPVCPYFSGDCRPTNASAEAHNVDSAMKVWDKTLELIGLPSNAVERLMEGEVVPCKYCHQNMTEVDY

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
295			20	80	0.995493
336	16			83	0.994512
337		16	83		0.994512
338	16	83			0.994512
340			83	16	0.994512
359	14	85			0.993533
362	85			14	0.993533
392	14		85		0.993533
397			85	14	0.993533
467	14	85			0.993533
468		14		85	0.993533
471			85	14	0.993533
531	20			80	0.995493
613	16		83		0.994512
614		16		83	0.994512
615	16		83		0.994512
678	20	80			0.995493
681		80		20	0.995493
828		20		80	0.995493
829	20			80	0.995493
830	80			20	0.995493
959		33	66		0.997452
960	33		66		0.997452
961	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain