SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6888

Length: 1509 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6888

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7365	26/26

Source	Descriptions	Term	Type	Identity
AutoFact	aldehyde dehydrogenase family 7 member A1 [Euphorbia characias]	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	aldehyde dehydrogenase family 7 member a1	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Aldehyde dehydrogenase (NAD(+)).	EC:1.2.1.3	-	0.0	88%

Source	KEGGs	Term	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010	88%
Blast2go	Pentose and glucuronate interconversions	00040	88%
Blast2go	Ascorbate and aldarate metabolism	00053	88%
Blast2go	Fatty acid metabolism	00071	88%
Blast2go	Valine, leucine and isoleucine degradation	00280	88%
Blast2go	Lysine degradation	00310	88%
Blast2go	Arginine and proline metabolism	00330	88%
Blast2go	Histidine metabolism	00340	88%
Blast2go	Tryptophan metabolism	00380	88%
Blast2go	beta-Alanine metabolism	00410	88%
Blast2go	Glycerolipid metabolism	00561	88%
Blast2go	Pyruvate metabolism	00620	88%
Blast2go	Chloroalkane and chloroalkene degradation	00625	88%
Blast2go	Propanoate metabolism	00640	88%
Blast2go	Limonene and pinene degradation	00903	88%
Blast2go	Metabolic pathways	01100	88%
Blast2go	Biosynthesis of secondary metabolites	01110	88%

Source	GOs	Term	Type	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	88%
Blast2go	response to desiccation	GO:0009269	Biological Process	88%
Blast2go	response to salt stress	GO:0009651	Biological Process	88%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	88%
Blast2go	aldehyde dehydrogenase (NAD) activity	GO:0004029	Molecular Function	88%
Blast2go	3-chloroallyl aldehyde dehydrogenase activity	GO:0004028	Molecular Function	88%

Source	InterPros	Term	Type	Identity
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LS13

Fln msg: Separated hits, possible frame ERROR between 91 and 93, your sequence is shorter than subject: 420 - 511

Fln protein: RSKLDLLGRLVSLEMGKILAEGIGEVQEFxxDMCDYAVGLSRQLNGSIIPSERPNHMMMEVWNPLGIVGVITAFNFPCAVLGWNACIALVCGNCVVWKGAPTTPLITIATTKLIAEVLERNGLPGAIFTCTCGGAEIGQAIAEDGRIPLVSFTGSTKVGQIVQKAVNARFGKCLLELSGNNAIIVMEDADLAMVVRSVLFAAVGTAGQRCTSCRRLLLHEKIYQHIVEQLTDAYKQVKLGDPVDKDTLLGPLHTRASKMNFEKGIQVIKSQGGRILTGGSVIEHEGNFVQPTIVEISKDAPVVKEELFGPVLYVLKFQTLEEAIEINNSVAQGLSSSIFTRSPEAIFKWIGPCGSDCGIVNINIPTSGAEIGGAFGGEKATGGGREAGSDSWKQYMRRATCTLNYGSELPLAQGINFGC*

Protein Length: 421

Fln nts: GCGATCAAAATTGGATTTGCTTGGTAGACTTGTATCGTTGGAGATGGGCAAAATCCTCGCAGAGGGGATAGGAGAGGTTCAAGAATTTATxxxTGACATGTGTGATTATGCGGTTGGCTTAAGTCGACAGTTGAATGGGTCTATCATACCTTCAGAACGGCCCAATCATATGATGATGGAGGTTTGGAATCCTCTTGGCATAGTTGGAGTAATTACTGCATTCAACTTTCCATGTGCTGTACTTGGGTGGAATGCATGCATCGCTTTGGTTTGTGGCAATTGTGTTGTTTGGAAAGGTGCTCCTACTACACCATTGATCACTATAGCGACAACAAAACTCATAGCCGAGGTGTTAGAGAGAAATGGCTTGCCTGGTGCCATTTTCACCTGCACCTGTGGTGGTGCAGAGATTGGGCAGGCGATAGCTGAAGATGGAAGAATCCCATTGGTCTCTTTCACTGGAAGCACGAAGGTTGGACAAATTGTTCAGAAGGCAGTCAATGCAAGATTTGGGAAGTGTTTGCTTGAACTTAGTGGAAACAATGCCATTATAGTTATGGAAGACGCAGACTTAGCAATGGTTGTGCGATCTGTTTTGTTTGCTGCAGTTGGTACTGCTGGACAACGATGCACCAGTTGCCGAAGGCTGTTACTCCACGAGAAGATATACCAGCACATCGTTGAGCAGTTGACTGATGCATATAAGCAAGTTAAATTGGGAGACCCTGTTGATAAAGATACACTGTTAGGACCACTGCATACTCGTGCCTCAAAGATGAACTTTGAGAAGGGCATTCAAGTTATAAAATCTCAGGGTGGGCGCATTCTGACGGGTGGCTCTGTTATAGAGCATGAAGGGAATTTTGTGCAACCTACAATTGTGGAAATATCTAAAGATGCACCTGTTGTGAAGGAAGAGCTTTTTGGGCCTGTTCTCTATGTCTTGAAGTTTCAGACCTTGGAGGAAGCTATTGAAATAAACAATTCTGTTGCTCAAGGCCTAAGTAGTTCCATCTTCACTCGGAGCCCAGAAGCTATTTTTAAGTGGATTGGACCTTGTGGTAGTGACTGTGGTATTGTAAACATAAATATACCAACTAGTGGGGCAGAGATTGGGGGTGCATTTGGTGGTGAAAAGGCAACCGGTGGTGGTCGTGAAGCAGGAAGTGATTCATGGAAACAGTACATGCGTCGTGCAACTTGTACACTCAATTATGGGAGCGAACTGCCACTAGCACAAGGGATTAATTTTGGATGTTAAGCATTTTGAATCCTGCAGAGATATTGCTCAAATGCACTCTTGATTTTGAAATATGTAGAATACCAGCAAAAGTTGCTCTATGCAGGTGCTTCTTGTTGGAAACCAAAAATATTTAGTAGCACCATCCAGTGGATGACAAAATACAGTGTTGGAAATATTCAAAGTACCATCCATTCTACAAAGATGCGTTATTTACGTAGAGATGATATCATTAAATAAATTCAACAAGCCTTACTTTAATCTTTACATT

Fln Alignment:

Contig6888___RSKLDLLGRLVSLEMGKILAEGIGEVQEFMxDMCDYAVGLSRQLNGSIIPSERPNHMMMEVWNPLGIVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXXXXXEVLERNGLPGAIFTCTCGGAEIGQAIAEDGRIPLVSFTGSTKVGQIVQKAVNARFGKCLLELSGNNAIIVMEDADLAMVVRSVLFAAVGTAGQRCTSCRRLLLHEKIYQHIVEQLTDAYKQVKLGDPVDKDTLLGPLHTRASKMNFEKGIQVIKSQGGRILTGGSVIEHEGNFVQPTIVEISKDAPVVKEELFGPVLYVLKFQTLEEAIEINNSVAQGLSSSIFTRSPEAIFKWIGPCGSDCGIVNINIPTSGAEIXXXXXXXXXXXXXXXXXSDSWKQYMRRATCTLNYGSELPLAQGINFGC
B8LS13_________________RSKLDLLGRLVSLEMGKILAEGIGEVQEFIxDMCDYAVGLSRQLNGSIIPSERPNHMMMEVWNPLGIVGVITAFNFPCAVLGWNACIALVCGNCVVWKGAPTTPLITIATTKLIAEVLERNGFPGAIFTSICGGAEIGQAIAEDGRIPLVSFTGSTKVGQIVQNAVNARFGKCLLELSGNNAIIVMEDADLAMVVRSVLFAAVGTAGQRCTSCRRLLLHEKVYQHVIEQLTDAYKQVKLGDPLDKDTLLGPLHTRASKINFEKGIQVIKSQGGRILTGGSVIEHEGNFVQPTIVEISKDAPVVKEELFGPVLYVLKFQTLEEAIEINNSVSQGLSSSIFTRSPEAIFKWIGPCGSDCGIVNINIPTSGAEIGGAFGGEKATGGGREAGSDSWKQYMHRATCTLNYGSELPLAQGINFGC

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
273	16		66		0.988813
274	16			83	0.994512
275			83	16	0.994512
276	16		83		0.994512
277		83		16	0.994512
311		80		20	0.995493
312		80		20	0.995493
618	20		80		0.995493
619	20	80			0.995493
622			80	20	0.995493
673	20	80			0.995493
674	80			20	0.995493
675			80	20	0.995493
1220		20	80		0.995493
1222	80		20		0.995493
1259	14		85		0.993533
1285		16		83	0.994512
1411	16		83		0.994512
1444	75			25	0.996473
1445	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain