SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6883

Length: 2072 nt

UniGene Fasta

>biog3_v1.0_unigene6883
CCTTAAAAAAAGGAATCCTAGAAGGAAGGTTAATATAATTAAGGATGTACGAGATGCTGAGGAACAAGCGGCCGTCGATAACTTTCGTCAAGCACTTATTGCAGAAGACCTGCTGCCTCCCAGACACGATGATTATCATATGATGTTGAGATTCTTGAAAGCAAGGAAATTTGACATTGAGAAAACGAAGCAAATGTGGGCCGAGATGCTTCGTTGGAGAAAGGAGTATGGTGCTGATACTATCGAGGAGGATTTTGACTTCAAAGAGCTACATGAAGTTCTCAAGTACTATCCACAAGGTCATCATGGAGTAGACAAGGCTGGAAGACCAGTTTATATAGAGCAAATTGGCAAGGTTGATCCGATTAAACTGATGCAGGTTACAACTATTGAGAGATATCTGAAGTATCATGTTCAGGAATTTGAGAAGACTTTGAATGTTAAGTTCCCTGCCTGTTCCATTGCTGCAAAAAGTCACATCGATTCCACCACAACAATTTTGGATGTCCAGGGTGTGGGTCTAAAGAATTTCAATAAGTCTGCAAGAGAACTTATATTACGTATACAGAAAATTGACGGGGACAACTATCCTGAGACATTGTGTCAGATGTTCATCATCAATGCTGGTGCTGGTTTTAGATTGCTATGGAACACTATAAAAAGTTTCCTTGATCCAAAGACAACTGCAAAGATACATGTACTTGGAAATAAGTATCAGAGCAAGCTCTTAGAAGTCATTGATGCAAGCCAATTGCCTGAATTTTTGGGTGGCAACTGTGTATGTCCTGAAGGAGGGTGCCTTGCATCTGACAAGGGACCGTGGAAGGATCCAGAGATAATGAAGTTGGTGCATGGTGAAGCTAGATTTGCAAGGCAAATTGTGACCATAACCGTTGATGGGAAGACAATTTCGCATGGTAAACCACATTATACAAAGGCAAAGGGTGGTGATACATCTACTGCAGAGTCGGGGTCAGATGTAGATGATGTTGTCTCTCCTAAAGTACACAGGGGCCCTGGACTTTCTCGGTTAACTCCTGTTCATGAGGAAGGCAAGGTTGCTTGGCAAGCAAATTCCTCTGATGGATTTTCGGAGTATGAATCTGTTCCTATGGTCGACAAGGCTGTGGATATTAGTTGGAAACGAAAGTGTTATGGAGAAAATTTGCCGGTATCGAAAGATGTCTTCCTACCCGTAGATGATCTTAAAATACCCCAGGGGATCATTGTGCAGATTACGGCATTTTTTATGGCCTTCATTATGAGCATACTTGCTGTATTCAATTTTGCTACAGATGGCATCAAAAAGAAAGTGTCAAGTGGAAATAAGAATGCAGAGCTGAAGTCCAAGACCATAGCATATAATTATGAGACTGAGCCTACGGAGGAATCTCAGCATCCTACTACATGTGAGTTCACTGCTAAAGATGTTCTTCCATCTGTTCTAAAGCGTCTTCAGGAGTTGGAAGATAAGGTCAATGAGGTTAGTGCAAAGCCTCCTCAGATGCCAGAAGAAAAGGAGGAATTATTGAATGCTGCTACAAGCCGGATTCATGCTTTAGAAACTGAGCTGGAAGCAACAAAGAAGGCATTGAAGGAAGCACTTGCTAAACAGGAAGAGCTTATTGAATCCATGGAGAAAATGAAGGAACTTCAATTTCGTAAAAGGAGATTTTGTTGGTGAAGCATATTCTCTCAACTACAGTATCTGGTGTTTGATTTAAATGGCTTCTGCCCTTGTTTTACTTCTCCGAAGATTCTTTCAGCTTGATGATTTTGAAGTCACTATATTGACTTGAGAAGAGAAAGTTGTGATTGGACTTTGGAATGTGCGTGTGAAGTTTTTGGAATGTTGCAAAGTTAAAAATGGTTATTCTTTGGCGAATGTATAACCTGCATGAACTTTGACAAGTTGACAAGGACAAATTGTGGAGTTGCCTAACATAATAGCATGGTATATGTGTTTCCACTTTTACTTTTGGTGATGGTATTTTGTGAATGTAGACTGTTGAACACTGGGATTGACATTGTTAATTGAGTTGTGGCTTATTTTCAAGTCTTATTTTGATTTG

Ace file of the UniGene biog3_v1.0_unigene6883

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23227	67/67

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphatidylinositol transporter, putative n=1 Tax=Ricinus communis RepID=B9RH84_RICCO	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	sec14 cytosolic factor	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	CRAL-TRIO domain	IPR001251	-	0.0	-
Sma3		IPR008273	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQR7

Fln msg: your sequence is shorter than subject: 561 - 621

Fln protein: LKKRNPRRKVNIIKDVRDAEEQAAVDNFRQALIAEDLLPPRHDDYHMMLRFLKARKFDIEKTKQMWAEMLRWRKEYGADTIEEDFDFKELHEVLKYYPQGHHGVDKAGRPVYIEQIGKVDPIKLMQVTTIERYLKYHVQEFEKTLNVKFPACSIAAKSHIDSTTTILDVQGVGLKNFNKSARELILRIQKIDGDNYPETLCQMFIINAGAGFRLLWNTIKSFLDPKTTAKIHVLGNKYQSKLLEVIDASQLPEFLGGNCVCPEGGCLASDKGPWKDPEIMKLVHGEARFARQIVTITVDGKTISHGKPHYTKAKGGDTSTAESGSDVDDVVSPKVHRGPGLSRLTPVHEEGKVAWQANSSDGFSEYESVPMVDKAVDISWKRKCYGENLPVSKDVFLPVDDLKIPQGIIVQITAFFMAFIMSILAVFNFATDGIKKKVSSGNKNAELKSKTIAYNYETEPTEESQHPTTCEFTAKDVLPSVLKRLQELEDKVNEVSAKPPQMPEEKEELLNAATSRIHALETELEATKKALKEALAKQEELIESMEKMKELQFRKRRFCW*

Protein Length: 562

Fln nts: CCTTAAAAAAAGGAATCCTAGAAGGAAGGTTAATATAATTAAGGATGTACGAGATGCTGAGGAACAAGCGGCCGTCGATAACTTTCGTCAAGCACTTATTGCAGAAGACCTGCTGCCTCCCAGACACGATGATTATCATATGATGTTGAGATTCTTGAAAGCAAGGAAATTTGACATTGAGAAAACGAAGCAAATGTGGGCCGAGATGCTTCGTTGGAGAAAGGAGTATGGTGCTGATACTATCGAGGAGGATTTTGACTTCAAAGAGCTACATGAAGTTCTCAAGTACTATCCACAAGGTCATCATGGAGTAGACAAGGCTGGAAGACCAGTTTATATAGAGCAAATTGGCAAGGTTGATCCGATTAAACTGATGCAGGTTACAACTATTGAGAGATATCTGAAGTATCATGTTCAGGAATTTGAGAAGACTTTGAATGTTAAGTTCCCTGCCTGTTCCATTGCTGCAAAAAGTCACATCGATTCCACCACAACAATTTTGGATGTCCAGGGTGTGGGTCTAAAGAATTTCAATAAGTCTGCAAGAGAACTTATATTACGTATACAGAAAATTGACGGGGACAACTATCCTGAGACATTGTGTCAGATGTTCATCATCAATGCTGGTGCTGGTTTTAGATTGCTATGGAACACTATAAAAAGTTTCCTTGATCCAAAGACAACTGCAAAGATACATGTACTTGGAAATAAGTATCAGAGCAAGCTCTTAGAAGTCATTGATGCAAGCCAATTGCCTGAATTTTTGGGTGGCAACTGTGTATGTCCTGAAGGAGGGTGCCTTGCATCTGACAAGGGACCGTGGAAGGATCCAGAGATAATGAAGTTGGTGCATGGTGAAGCTAGATTTGCAAGGCAAATTGTGACCATAACCGTTGATGGGAAGACAATTTCGCATGGTAAACCACATTATACAAAGGCAAAGGGTGGTGATACATCTACTGCAGAGTCGGGGTCAGATGTAGATGATGTTGTCTCTCCTAAAGTACACAGGGGCCCTGGACTTTCTCGGTTAACTCCTGTTCATGAGGAAGGCAAGGTTGCTTGGCAAGCAAATTCCTCTGATGGATTTTCGGAGTATGAATCTGTTCCTATGGTCGACAAGGCTGTGGATATTAGTTGGAAACGAAAGTGTTATGGAGAAAATTTGCCGGTATCGAAAGATGTCTTCCTACCCGTAGATGATCTTAAAATACCCCAGGGGATCATTGTGCAGATTACGGCATTTTTTATGGCCTTCATTATGAGCATACTTGCTGTATTCAATTTTGCTACAGATGGCATCAAAAAGAAAGTGTCAAGTGGAAATAAGAATGCAGAGCTGAAGTCCAAGACCATAGCATATAATTATGAGACTGAGCCTACGGAGGAATCTCAGCATCCTACTACATGTGAGTTCACTGCTAAAGATGTTCTTCCATCTGTTCTAAAGCGTCTTCAGGAGTTGGAAGATAAGGTCAATGAGGTTAGTGCAAAGCCTCCTCAGATGCCAGAAGAAAAGGAGGAATTATTGAATGCTGCTACAAGCCGGATTCATGCTTTAGAAACTGAGCTGGAAGCAACAAAGAAGGCATTGAAGGAAGCACTTGCTAAACAGGAAGAGCTTATTGAATCCATGGAGAAAATGAAGGAACTTCAATTTCGTAAAAGGAGATTTTGTTGGTGA___AGCATATTCTCTCAACTACAGTATCTGGTGTTTGATTTAAATGGCTTCTGCCCTTGTTTTACTTCTCCGAAGATTCTTTCAGCTTGATGATTTTGAAGTCACTATATTGACTTGAGAAGAGAAAGTTGTGATTGGACTTTGGAATGTGCGTGTGAAGTTTTTGGAATGTTGCAAAGTTAAAAATGGTTATTCTTTGGCGAATGTATAACCTGCATGAACTTTGACAAGTTGACAAGGACAAATTGTGGAGTTGCCTAACATAATAGCATGGTATATGTGTTTCCACTTTTACTTTTGGTGATGGTATTTTGTGAATGTAGACTGTTGAACACTGGGATTGACATTGTTAATTGAGTTGTGGCTTATTTTCAAGTCTTATTTTGATTTG

Fln Alignment:

Contig6883___LKKRNPRRKVNIIKDVRDAEEQAAVDNFRQALIAEDLLPPRHDDYHMMLRFLKARKFDIEKTKQMWAEMLRWRKEYGADTIEEDFDFKELHEVLKYYPQGHHGVDKAGRPVYIEQIGKVDPIKLMQVTTIERYLKYHVQEFEKTLNVKFPACSIAAKSHIDSTTTILDVQGVGLKNFNKSARELILRIQKIDGDNYPETLCQMFIINAGAGFRLLWNTIKSFLDPKTTAKIHVLGNKYQSKLLEVIDASQLPEFLGGNCVC-PEGGCLASDKGPWKDPEIMKLVHGEARFARQIVTITVDGKTISHGKPHYTKAKGGDTSTAESGSDVDDVVSPKVHRGPGLSRLTPVHEEGKVAWQANSSDGFSEYESVPMVDKAVDISWKRKCYGENLPVSKDVFLPVDDLKIPQGIIVQITAFFMAFIMSILAVFNFATDGIKKKVSSGNKN-AELKSKTIAYNYETEPTEESQHP-TTCEFTAKDVLPSVLKRLQELEDKVNEVSAKPPQMPEEKEELLNAATSRIHXXXXXXXXXXXXXXXXXXXXXXXIESMEKMKELQFRKRRFCW
B8LQR7_________________LKKRNPRRKVNIIQDVRDAEEQAAVDNFRQALIAEDLLPPRHDDYHMMLRFLKARKFDIEKTKYMWAEMLRWRKEYGADTIEEDFDFKELPEVLKYYPQGHHGVDKEGRPVYIERLGKVDPIKLMQVTTIERYLKYHVQEFEKTFNVKFPACSIAAKKHIDSTTTILDVQGVGLKNFNKSARELILRIQKIDGDNYPETLCQMFIINAGTGFRLLWNTIKTFLDPKTTAKIHVLGNKYQSKLLEVIDASQLPEFLGGNCVCGEEGGCLSSDKGPWKDPEIMKLVHGEARFARQIVTVTVDGKTISHGKPHYTKAKGGDTSTAESGSDVDDVVSPKVYRGPGLARLTPVHEEGKVAWQANSSDGFLEYESVPMVDKAVDIGWKRKVYGENLPVSKDIFLPVDDLKTPQGIIVQITAFFMAFIMSIFAVFTFATDGIKKKVSSGKMNAAELKSKTIAYNYDTEPKEESQHPMPTSEFSDKDVLSSVLKRLQDLEDKVNEVSTNPPQMPEEKEELLNAATSRIHALETELEATKKALKEALDKQEELIESMEQMKEAQFRKRRFCW

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
630	12		87		0.992554
631	12	87			0.992554
634			87	12	0.992554
682	14	85			0.993533
683	85	14			0.993533
685		85		14	0.993533
728	25			75	0.996473
750	66			33	0.997452
751			66	33	0.997452
1774	16		83		0.994512
1809		16	83		0.994512
1811	83			16	0.994512
1812	83			16	0.994512
1849	20			80	0.995493
1850	20			80	0.995493
1870	80	20			0.995493
1872	80			20	0.995493
1909	14			85	0.993533
2037	25			75	0.996473
2038	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain