SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6873

Length: 903 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene6873 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3495	12/24
SustainPine v2.0	sp_v2.0_unigene9544	12/24

Source	Descriptions	Term	Type	Identity
AutoFact	photosystem I reaction center subunit III [Vigna radiata]	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	photosynthesis	GO:0015979	Biological Process	86%
Blast2go	chloroplast thylakoid lumen	GO:0009543	Cellular Component	86%
Blast2go	photosystem I reaction center	GO:0009538	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Photosystem I PsaF, reaction centre subunit III	IPR003666	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
461	25		75		1.0
462	12			87	0.992554
464		85	14		0.993533
523	16		83		0.994512
524			83	16	0.994512
548		83		16	0.994512
553	16	83			0.994512
557		83		16	0.994512
558			83	16	0.994512
646	16			83	0.994512
647		83		16	0.994512
661	25			75	0.996473
664	25	75			0.996473
724	66		33		0.997452
783		33		66	0.997452
784	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain