SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6868

Length: 357 nt

UniGene Fasta

>biog3_v1.0_unigene6868
GTAAGTCTGGAGAGGAGCTGAATTTCACATATGTTGAGTGTCTGTTGTTTACATTCCATCAACTTTCTCACAAGACTCCAAACTCGACAAATAGCCTATGTGGTTACAGGATAGTAACTGGTCAGCCATCAGATAGACTTGGGGAGGATTTTTCTGAGAATTTTAAGGATTTTACTGAAAGATTGACGATAGTTGAGGATCTCGCTCGGGCTACCATGAAAAAGTTAACCCAAGGAATGTCAGAACATAATAAGGCCATGGCTGCTGCCAAGGATGATGCTGCAAAGGCTGACGTAAAAATGAAAAAACAGAATACTACAACAGGCCTAAAAACCTGCAATAACATATTGGCACATT

Ace file of the UniGene biog3_v1.0_unigene6868

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene695	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	Apoptosis inhibitory protein 5 (API5) [Arabidopsis thaliana] gb\|AAB67622.2\| expressed protein [Arabidopsis thaliana] gb\|AAM62452.1\| unknown [Arabidopsis thaliana] gb\|AAN72062.1\| expressed protein [Arabidopsis thaliana] gb\|AAQ56832.1\| At2g34040 [Arabidopsi	-	-	60%
FL-Next	tr=Apoptosis inhibitory protein 5 (API5); Arabidopsis thaliana (Mouse-ear cress).	-	-	80%
Blast2go	apoptosis inhibitory protein 5	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	anti-apoptosis	GO:0006916	Biological Process	0.0	81%
Blast2go	binding	GO:0005488	Molecular Function	0.0	81%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Apoptosis inhibitory 5	IPR008383	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: O22957

Fln msg: Distance to subject end: 103 aas, your sequence is shorter than subject: 118 - 553

Fln protein: KSGEELNFTYVECLLFTFHQLSHKTPNSTNSLCGYRIVTGQPSDRLGEDFSENFKDFTERLTIVEDLARATMKKLTQGMSEHNKAMAAAKDDAAKADVKMKKQNTTTGLKTCNNILAH

Protein Length: 119

Fln nts: GTAAGTCTGGAGAGGAGCTGAATTTCACATATGTTGAGTGTCTGTTGTTTACATTCCATCAACTTTCTCACAAGACTCCAAACTCGACAAATAGCCTATGTGGTTACAGGATAGTAACTGGTCAGCCATCAGATAGACTTGGGGAGGATTTTTCTGAGAATTTTAAGGATTTTACTGAAAGATTGACGATAGTTGAGGATCTCGCTCGGGCTACCATGAAAAAGTTAACCCAAGGAATGTCAGAACATAATAAGGCCATGGCTGCTGCCAAGGATGATGCTGCAAAGGCTGACGTAAAAATGAAAAAACAGAATACTACAACAGGCCTAAAAACCTGCAATAACATATTGGCACATT

Fln Alignment:

Contig6868___KSGEELNFTYVECLLFTFHQLSHKTPNSTNSLCGYRIVTGQPSDRLGEDFSENFKDFTERLTIVEDLARATMKKLTQGMSEHNXXXXXXXXXXXXXXXXXXXQNTTTGLKTCNNILA
O22957_________________KTGEEMNFTYVECLLYAFHHLAHKVPNATNSLCGYKIVTGQPSDRLGEDFSELNKDFTERLTIVEDLTKATMKKLTQGMTEHNKAMSAAKTDEEKASIKTKRQNTTTGLRTCNNILA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain