SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6859

Length: 1251 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene6859 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8253	36/36

Source	Descriptions	Term	Type	Identity
AutoFact	protein disulfide isomerase12 [Zea mays] gb\|AAX09970.1\| protein disulfide isomerase [Zea mays]	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	33%
Blast2go	protein disulfide-isomerase 5-4-like	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein disulfide-isomerase.	EC:5.3.4.1	-	0.0	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell redox homeostasis	GO:0045454	Biological Process	0.0	81%
Blast2go	protein disulfide isomerase activity	GO:0003756	Molecular Function	0.0	81%

Source	InterPros	Term	Type	Identity
Sma3		IPR012335	-	-
Sma3	Domain of unknown function DUF1692	IPR012936	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3		IPR017936	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSV6

Fln msg: STOP codon was not found. Distance to subject end: 81 aas, No stop codon before M and low homology subject, your sequence is longer than subject: 359 - 279

Fln protein: MKLAGPEFHPGPIPGLSNHGEHENESDEELGGGAVNMNAKNFDKYAHEYTILVVNFFAPWCAWSNRLKPSWEKAASIMRERYHPELDKRILLGKVDCTQEPDLCRRHHIQGYPSIRIFRKGNDVRESHGHHEHESYYGDRDSDSLVTAMETLVTTIPSETHLALEDKSGTANATKRPAPKTGACRIEGFVRVKKVPGNLIISAHSGSHSFDATTMNMSHVISYFTFGKRLSWQMVKEMKRLTPYLGAGTDRLTGKPYITDHENVTIDHYIQVVKTEVASSKGSGSEILLEQYDYTAHSSMMQTADVPVAKFHFELSPLQVLMTENSKSFSHFITNVCAIIGGVFTVAGIIDSIFHNTMQ

Protein Length: 360

Fln nts: ACAACAAATGTTGTTGTTGATAGAAGCCAGGATGGTGATCATTTGCGCATTGACTTTAATATCAGTTTTCTTGCTTTGTCATGTGAGTTTGCTTCAGTTGATGTGAGTGATGTGTTAGGCACGAATAGACTGAATATAACAAAAACAGTGCGCAAGTTTCCTATAAGTCCTGAT_-_ATGAAGTTAGCTGGTCCCGAATTCCACCCAGGACCTATTCCAGGTCTTTCAAACCATGGAGAGCATGAGAATGAAAGTGACGAGGAGCTTGGTGGAGGAGCTGTCAATATGAATGCTAAGAACTTTGATAAATATGCCCATGAGTATACGATTTTGGTGGTCAATTTTTTTGCCCCTTGGTGTGCCTGGAGCAATCGTCTGAAACCCTCGTGGGAGAAAGCAGCTAGCATTATGAGAGAGAGATATCATCCCGAGCTTGATAAAAGAATCCTGTTGGGCAAGGTGGACTGCACTCAAGAACCTGATTTATGTAGACGGCATCACATTCAAGGGTACCCATCTATTAGGATCTTTCGTAAGGGAAATGATGTAAGGGAAAGTCATGGACACCACGAACATGAATCTTATTATGGAGACAGAGACTCTGATTCATTGGTTACGGCAATGGAGACATTGGTTACAACCATTCCCTCTGAGACACATCTGGCATTGGAAGATAAATCAGGTACTGCAAATGCAACCAAGCGGCCTGCACCAAAGACAGGGGCTTGCAGAATAGAGGGATTTGTACGAGTAAAGAAGGTGCCTGGAAACCTTATAATATCTGCTCACTCTGGATCACATTCATTTGATGCTACAACAATGAATATGTCCCACGTGATCTCTTATTTTACTTTTGGAAAAAGACTTTCCTGGCAAATGGTGAAGGAAATGAAGCGTTTAACACCTTATCTCGGTGCGGGTACAGATCGCTTGACTGGGAAGCCCTACATTACAGATCATGAAAATGTTACGATTGATCACTATATTCAAGTTGTTAAGACCGAGGTGGCGTCAAGTAAAGGTAGCGGAAGTGAAATTTTACTTGAACAGTATGATTACACTGCACATAGTAGTATGATGCAAACTGCAGATGTTCCTGTTGCAAAATTTCATTTTGAACTCTCCCCCTTGCAGGTCTTGATGACAGAGAATTCCAAGTCATTTTCACACTTCATTACCAATGTTTGCGCTATCATTGGTGGTGTTTTCACGGTTGCAGGTATTATTGATTCCATATTCCATAATACAATGCAA

Fln Alignment:

Contig6859___NHGEHENESDEELGGGAVNMNAKNFDKYAHEYTILVVNFFAPWCAWSNRLKPSWEKAASIMRERYHPELDKRILLGKVDCTQEPD--LCRRHHIQGYPSIRIFRKG
A9NSV6_________________SEAEAEAETEAEGGEAVLTLDANNFAEALSSHPFIVVEFYAPWCGHCKRLAPEYEKAAASLKNH-----DPPIVLAKVDANEETNKALASEYDVKGFPTLKIIRKG

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
159	25	75			0.996473
160	75			25	0.996473
162			75	25	0.996473
976	14			85	0.993533
978		85	14		0.993533
993		28		71	1.0
1011	57		42		1.0
1054	28		71		1.0
1055		28	71		1.0
1058		71		28	1.0
1135	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain