SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6830

Length: 1045 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6830

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23579	12/12

Source	Descriptions	Term	Type	Identity
AutoFact	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana] ref\|NP_849545.1\| TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana] dbj\|BAC43394.1\| unknown protein [Arabidopsis thaliana] gb\|AA	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	59%
Blast2go	lag1 and cln8 lipid-sensing domain containing protein	-	-	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	TRAM/LAG1/CLN8 homology domain	IPR006634	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: C6TFQ6

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 224 - 280

Fln protein: M*SLRYTSKATASLQIRAN*MEQQEFLYCTCNSCFSCFYIPLVLF*IFHDNAQDGPVTLRNSQFSTFILGVSMGYFLSDLGMILWLYPALGGKEYVFHHLLSLSAIALSLFSGHAQIYIYMVLLSESTTPEINLRWYLDTAGLKKSKIYVMNGVALFLVWLVARIILFIYFFIHIYIHYDEVKLITPAGFYSLFITPPLLFLMNIYWFGRIMKGLRKTLSKRA*

Protein Length: 225

Fln nts: AATGTGATCACTCCGCTATACTTCAAAGGCTACTGCAAGCTTGCAAATCCGAGCAAATTGAATGGAACAACAGGAGTTTCTCTACTGCACATGCAATTCTTGTTTCAGTTGTTTCTATATACCTCTTGTTCTTTTCTGAATTTTCCATGACAATGCTCAAGATGGACCTGTTACTCTCAGAAATTCGCAGTTCTCAACCTTTATTTTGGGGGTGTCAATGGGTTATTTTTTGTCTGACCTGGGAATGATACTTTGGCTTTATCCGGCCTTGGGTGGTAAAGAATATGTTTTCCATCATTTGTTATCCCTTAGTGCAATTGCCCTCTCCTTATTCAGTGGGCATGCGCAAATCTATATTTATATGGTTCTTTTGTCAGAAAGCACCACACCGGAAATAAATCTGAGATGGTATCTGGACACTGCAGGGCTGAAGAAGTCAAAGATTTATGTTATGAATGGAGTTGCATTGTTCCTCGTGTGGCTGGTTGCAAGAATTATATTGTTCATTTACTTTTTCATCCACATTTACATCCACTACGATGAGGTGAAACTGATCACTCCAGCTGGATTCTACAGCCTTTTTATAACACCTCCATTGTTATTTTTAATGAATATATATTGGTTCGGGAGAATCATGAAAGGATTGAGGAAGACACTGTCAAAAAGGGCTTAA___TTTTTGGGCAAGTTAGTTCTGTTAATATAGAGTCATAGACATTCTCTCAATTAGCTATCTCAACAGTTTCCATTTTGTGTTGAGGGTAGATTTCTAGTAAATTATCCCAGTTAATCATAATTGGAATCCATTCTTTGATACAAGTTACAACTGTATGTATATATGCCTGGCCCTGACTGGGGTTATTGTTAATTATTTACTTCTGGGGCTATGTTTTGTGGGTGGTAGCAGAGATCCAAGCTCAATGTTGGTTATGACTAGTAGAATTCTTTGAGAGTCAGACAAGAATGTCACTCTGAGCTGTCATCTTCATCCCACTCTCTTGTATTCAAGGCAAATGCTGGCTGAAAACTAAGCTAAACAGAATACATT

Fln Alignment:

Contig6830___FSCFYIPLVLF*IFHDNAQDGPVTLRNSQFSTFILGVSMGYFLSDLGMILWLYPALGGKEYVXXXXXXXXXXXXXXXXGHAQIYIYMVLLSESTTPEINLRWYLDTAGLKKSKIYVMNGVALFLVWLVARXXXXXXXXXXXXXXXDEVKLITPAGFYSLFITPPLLFLMNIYWFGRIMKGLRKTLSK
C6TFQ6_________________FMSFYL-LVLSDIFNKDSHEELIINRSSTFSNLVLGISIGYFLADLAMILWHFPALGGLEYVLHHGLSMFSIIQSLLSGQGLIYILMVLFSESTTPFVNLRWHLDIAGLKSSKLYVWNGIALFFGWLIARIFLFMFFFIHMWTHFDEVKEIFPLGFYSLLVVPPMLAMMNLFWFWKIAKGLVKTISK

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
346	14		85		0.993533
348	14		85		0.993533
349		85		14	0.993533
350	85			14	0.993533
376	16			83	0.994512
379			83	16	0.994512
380	83			16	0.994512
448	33			66	0.997452
685			66	33	0.997452
771	33			66	0.997452
775			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain