SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6818

Length: 954 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6818

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3429	28/28

Source	Descriptions	Term	Type	Identity
AutoFact	2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase, putative n=1 Tax=Ricinus communis RepID=B9T7S7_RICCO	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	64%
Blast2go	2-keto-3-deoxy-l-rhamnonate aldolase-like	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	cellular aromatic compound metabolic process	GO:0006725	Biological Process	68%
Blast2go	carbon-carbon lyase activity	GO:0016830	Molecular Function	68%
Blast2go	mitochondrion	GO:0005739	Cellular Component	68%
Blast2go	chloroplast	GO:0009507	Cellular Component	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aldehyde-lyase domain	IPR005000	-	0.0	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6HU67

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 288 - 359

Fln protein: WPIMAFRSHSRPASQTASVYTACSC*ASTPVVAEIVGFAGYDFAVIDMEHGPGDTMAALPVMQALASTQTPAILRIPDNDPVMVKKAMDLGPQGLMFPMIDGPKAAKRAVSYCRYPPKGIRGVAHSVVRASRYGVNEKYLEEYEDEVLVMCQVESEEAVKKIEEIAMVEGVDCIQMGPTDLSTSMGFLHDLGNKRAKEMLQRAEKGVLGLKNGPFLAGFAMPHDPPSELQRRGYHMVSGAVDIGLFRDAALADLRKHKTNGVETEDGVQQVEVLDVERELETEKLHG*

Protein Length: 289

Fln nts: TGGCCCATAATGGCCTTTCGAAGCCACTCAAGGCCCGCCTCGCAGACGGCGAGCGTTTATACGGCGTGTTCTTGCTAAGCTTCTACGCCGGTGGTGGCGGAAATAGTCGGATTCGCGGGCTACGACTTTGCTGTAATCGACATGGAGCACGGCCCCGGGGATACGATGGCGGCATTGCCCGTGATGCAGGCCTTGGCCTCCACCCAGACTCCGGCCATCTTAAGAATCCCGGACAATGACCCTGTTATGGTGAAGAAGGCCATGGATCTCGGCCCCCAGGGCCTTATGTTCCCCATGATAGACGGCCCCAAGGCCGCCAAGAGGGCCGTTTCGTATTGTCGGTACCCGCCCAAGGGCATCCGGGGGGTTGCGCATTCCGTCGTTAGGGCTTCCCGCTACGGGGTTAACGAGAAATACCTCGAGGAATACGAAGACGAGGTTTTGGTCATGTGCCAGGTGGAGTCTGAGGAGGCTGTGAAGAAAATAGAGGAAATAGCCATGGTCGAGGGTGTAGATTGTATTCAAATGGGTCCAACGGACTTGAGTACCAGTATGGGGTTTTTGCACGATTTGGGGAACAAGAGGGCTAAAGAGATGTTGCAGAGGGCGGAGAAGGGTGTTTTGGGGCTTAAGAATGGGCCCTTCTTGGCCGGCTTCGCAATGCCGCACGATCCGCCCAGTGAACTTCAACGACGTGGATATCATATGGTGTCCGGTGCTGTTGATATTGGATTGTTCAGGGATGCGGCGCTCGCTGATCTGAGGAAGCATAAGACTAATGGGGTGGAGACTGAGGATGGTGTGCAGCAAGTCGAGGTTTTGGATGTGGAGAGAGAATTGGAGACCGAGAAGCTACACGGGTGA___ATTCTAGCGCTACACTGCATGTTGGGGATGCATAGTTGGCGAGTTCGGTTCTAGTGGATGGGGTTGACTTCTAGCTAGCAGGCACCAACT

Fln Alignment:

Contig6818___TPVVAEIVGFAGYDFAVIDMEHGPGDTMAALPVMQALASTQTPAILRIPDNDPVMVKKAMDLGPQGLMFPMIDGPKAAKRAVSYCRYPPKGIRGVAHSVVRASRYGVNEKYLEEYEDEVLVMCQVESEEAVKKIEEIAMVEGVDCIQMGPTDLSTSMGFLHDLGNKRAKEMLQRAEKGVLGLK----NGPFLAGFAMPHDPPSELQRRGYHMVSGAVDIGLFRDAALADLRKHKTNGVETED
F6HU67_________________SPTLAEIAGLAGYDFVVVDMEHGHGGVSDALPCLHALAATRTPAIIRLPESCPTWAKKALDLGPQGIMFPMIDSPKLARKAVSYCRFPPAGVRGSAHTVVRASSYGIDAGYLSNYEEELLIMCQVESEEAVKKIEDIAAVDGVDCIQMGPMDLSASMGYLWDPGNKKVREMMKVAEKGVLGTKKKPREGAYLAGFAMPHDSPDDLRSRGYHMVSGAVDVGLFRSAAVEDVKKFKMGLKEASD

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
162	33			66	0.997452
164		66		33	0.997452
331	20			80	0.995493
332	20			80	0.995493
334		80	20		0.995493
335			80	20	0.995493
348	16	83			0.994512
349	16	83			0.994512
350			83	16	0.994512
351		83	16		0.994512
352		83		16	0.994512
505	10			90	0.90298
509			90	10	0.90298
510			90	10	0.90298
573	12			87	0.992554
574	12			87	0.992554
575			87	12	0.992554
577			87	12	0.992554
676	10	90			0.90298
677	10		90		0.90298
678		90		10	0.90298
679		90	10		0.90298
680		90		10	0.90298
806		50	50		1.0
860		85		14	0.993533
861			85	14	0.993533
865	16		83		0.994512
866	83	16			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain