SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6814

Length: 682 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene6814 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5143	11/21
SustainPine v2.0	sp_v2.0_unigene34571	10/21

Source	Descriptions	Term	Type	Identity
AutoFact	translocon at the inner envelope membrane of chloroplasts 20 [Arabidopsis thaliana] dbj\|BAC41843.1\| unknown protein [Arabidopsis thaliana] gb\|AEE27765.1\| translocon at the inner envelope membrane of chloroplasts 20 [Arabidopsis thaliana]	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	protein	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein import into chloroplast stroma	GO:0045037	Biological Process	0.0	75%
Blast2go	integral to membrane	GO:0016021	Cellular Component	0.0	75%

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
362	33	66			0.997452
391		66	33		0.997452
419	75			25	0.996473
457	20		80		0.995493
516		20		80	0.995493
527		20		80	0.995493
554	25	75			0.996473
557	75			25	0.996473
558	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain