SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6790

Length: 1264 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene6790 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17597	31/31

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF581 domain containing protein	-	-	1.0e-22	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	uncharacterized protein	-	-	0.0	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF581	IPR007650	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABW4

Fln msg:

Fln protein: MLGKRHRPAMRRTTSMSQLGACPGIENSPPSESCREEKQRAPNPIAPQSRIPSPPSTECGNSIPVLKSKNSPCGMNPNEGNNQPPPVDAFLKGMAPELAVPYPAQPFMGQGQFPFGHVGVKSNVKNPMGNRGDYTLTRTESFPQTVNPWGPDAQMVEPAHFLRACFLCKRRLGNGRDIYMYRDDRAFCSVECRHQQIVIDERKEKRLIKVMMAGSVPFEHQQNFDKNVKSGTIENVQSKTGAST*

Protein Length: 246

Fln nts: AATGTTCGCCCTTCTTCCCTGCGACTCTCGAACTATCGGAACCGCTAAATTTCGGGGGCAGGCGGGGTTTATGCCGCAATCACGCTTTTCATGTGTTGCAGTTCCTCTTCTTTATGGAGCAAATCGGCTGCCTGTAACAGCCCCTGTTTATAATATATGAAGAACAGGCGGGGTTCGGCTGATACTTCACGGGTTTGGATGATGCATTTATAGATTTTAGAGGTTCTGAATCTGTGTTGTGAGCTTTCAGAGAAACAAGT_-_ATGTTGGGCAAACGACATCGACCTGCTATGAGGCGCACAACGAGCATGTCGCAGTTGGGTGCATGTCCAGGCATTGAGAACAGTCCTCCAAGTGAGTCCTGCCGTGAAGAAAAGCAAAGGGCGCCCAACCCAATTGCCCCACAATCCAGGATACCCAGTCCCCCATCCACGGAATGCGGCAATAGCATACCCGTTTTGAAAAGCAAAAACAGCCCCTGTGGGATGAATCCTAATGAGGGCAATAATCAACCACCCCCTGTGGACGCCTTCTTGAAGGGTATGGCGCCAGAATTGGCCGTACCATATCCAGCTCAGCCATTCATGGGGCAAGGGCAGTTTCCTTTTGGTCATGTGGGTGTGAAAAGCAATGTGAAGAACCCCATGGGAAACAGAGGAGATTATACCTTGACGAGGACTGAATCGTTCCCGCAGACGGTTAATCCCTGGGGACCTGATGCGCAAATGGTCGAGCCTGCTCATTTTCTTCGGGCCTGCTTTCTCTGTAAGCGCCGGCTCGGTAATGGTCGGGACATCTACATGTATAGGGATGATAGAGCGTTCTGTAGTGTCGAATGTCGTCATCAACAAATTGTGATAGATGAGCGCAAAGAGAAACGCTTAATCAAGGTCATGATGGCAGGATCAGTTCCTTTTGAGCACCAGCAGAATTTTGACAAGAATGTCAAATCTGGGACAATTGAGAATGTTCAGTCAAAGACAGGAGCATCAACCTAA___GGTGGCCTAACTTGCATGTAAAGTATATACTTGAAAGCGTATCTACTATTCCTGCCTTTTGAAGGAATAACGCTGTTTTCTACTTTATCAGGAAAGTGTTTAAGAGCAATCTTGAGGTACTTTTGGCTCTAAGGGCTTGACAATGCTATAATATTGTTAGAGTGCTTGTGGCATCTATATGCTATGTTTTGTTATACAACATCTGCGCTAAAATTCAGGTTTATAAGATTGCCCTCATGGTTATTCTTAGTTAAGCCTTGTGAAGGCTT

Fln Alignment:

Contig6790___MLGKRHRPAMRRTTSMSQLGACPGIENSPPSESCREEKQRAPNPIAPQSRIPSPPSTECGNSIPVLKSKNSPCGMNPNEGNNQPPPVDAFLKGMAPELAVPYPAQPFMGQGQFPFGHVGVKSNVKNPMGNRGDYTLTRTESFPQTVNPWGPDAQMVEPAHFLRACFLCKRRLGNGRDIYMYRDDRAFCSVECRHQQIVIDERKEKRLIKVMMAGSVPFEHQQNFDKNVKSGTIENVQSKTGAST
D5ABW4_________________MLGKRHRPAMRRTTSMSQLGACSGIENSPPSESRRQEKQRVPYPIAPQSRVPSPPSNELGSSMPILKNKNSPHGMNPNDGNNQPPPVDAFMKGMAPELAVPYPAQPFMGQGQFPSVHVGVKSYV-NPMGIRGDHVLMRTESFPQTVNPWAHSAQMVETAHFLRACFFCQRRLGHGRDIYMYRDDRAFCSVECRHQQIVMDERKEKRLIKVMMAGSVPFEHQQNFDKNVKSGTIETVQSKTGATT

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
942	50		50		1.0
992		20		80	0.995493
993	20		80		0.995493
995		80		20	0.995493
1086	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain